Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0772
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    29   0.66 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.0  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 608 FLFSAKNCNISICYISYY*WDFGNL 682
           FLFS  +CN S+CY      DFG L
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGL 723


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 298 LSFYRPQI*LDLNEILKLVNAFIKLCDSETIKIKKYLQLLIWRI 429
           +S   P++ LD N I      FI LCD+ET  I    +  IW +
Sbjct: 332 ISMINPRVVLDENGISHRSRYFIMLCDNET-AIAHAKKTSIWAV 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,902
Number of Sequences: 5004
Number of extensions: 50882
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)