Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0772
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4)                     31   1.2  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         29   4.9  
SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)                 28   8.6  
SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)                 28   8.6  

>SB_31339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 VNPFYYTMAFSCLSFYRPQI*LDLNEILKLVNAFIKL 372
           +NPFY+ + FS L  +R QI  D   I+K  +  +K+
Sbjct: 86  LNPFYFKIRFSFLDTFRIQIADDSGNIIKFQSGAVKV 122


>SB_26972| Best HMM Match : Bro-N (HMM E-Value=3.4)
          Length = 323

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 VNPFYYTMAFSCLSFYRPQI*LDLNEILKLVNAFIKL 372
           +NPFY+ + FS L  +R QI  D   I+K  +  +K+
Sbjct: 278 LNPFYFKIRFSFLDTFRIQIADDSGNIIKFQSGAVKV 314


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 107 IFSFFINLL*NKEYHTYPNKVISVS 33
           +FS F +L  NK Y T PNK I +S
Sbjct: 531 VFSLFASLNENKSYITIPNKFIKLS 555


>SB_3992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 107 IFSFFINLL*NKEYHTYPNKVISVS 33
           +FS F +L  NK Y T PNK I +S
Sbjct: 133 VFSLFASLNENKSYITIPNKFIKLS 157


>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 107 IFSFFINLL*NKEYHTYPNKVISVS 33
           +FS F +L  NK Y T PNK I +S
Sbjct: 347 VFSLFASLNENKSYITIPNKFIKLS 371


>SB_49481| Best HMM Match : Trigger_C (HMM E-Value=1.6)
          Length = 342

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 614 FSAKNCNISICYISYY*WDFGNLIGCEI 697
           +  KN N+SICYIS    DF  L  CE+
Sbjct: 111 YVGKNINVSICYISL---DFVTLRVCEL 135


>SB_22264| Best HMM Match : UDPGT (HMM E-Value=6.4e-11)
          Length = 385

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 268 PFYYTMAFSCLSFYRPQI*LDLNEILKLVNAFIKLCDSETIKIKK 402
           PFY       L+     + + +  +L LVNA +K+C +++ + KK
Sbjct: 339 PFYQLYMLDVLAVLVMALLILIALVLSLVNAVVKMCKNDSSETKK 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,077
Number of Sequences: 59808
Number of extensions: 337660
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)