Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0771
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.051
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.1  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   3.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 238 SWQRISVVMNLTFFGCLVLGLPTGFF 161
           SWQR++ +  L   GC VL +P G F
Sbjct: 87  SWQRLTSLHELHVHGCKVLRIPEGAF 112


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
 Frame = +1

Query: 478 RRHQGGSRRQVETHEEKRE-AYINELRSRLKDHLEGV---------EKTRLTLEQQTAEV 627
           RR +  S R V    EK+  + + +  S+L D LE V         E  +LTL Q+TA+ 
Sbjct: 339 RRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDTLENVLAIVDRLMDETNQLTL-QETADA 397

Query: 628 YKAIEDK 648
           +K ++DK
Sbjct: 398 FKDLQDK 404


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 218 HRNPLPRDVEGRLAYEVILAEPVGVPVP 301
           H N   ++   +L Y +I  E + VPVP
Sbjct: 324 HNNNNYKNYNKKLYYNIINIEQIPVPVP 351


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 313 LTRKDSFRRRDPREAEGSRRE 375
           L   +SFR+R  REA G+ R+
Sbjct: 433 LAGDESFRKRRQREAAGNCRK 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,836
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)