Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0769
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    26   5.1  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.9  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 96  RVVLVPPAPHGGATVDVGCGXGH 28
           R V + P  H G    +GCG GH
Sbjct: 182 RQVTIVPNRHWGGNGAIGCGVGH 204


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 5   DAARLV**CPXPHPTSTVAPPCGAGGTNTTRR 100
           D A L   C  P P  T  PP G+ G+ +  R
Sbjct: 221 DGAPLQRVCSAPDPPKTSMPPFGSAGSPSPNR 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,907
Number of Sequences: 5004
Number of extensions: 34083
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)