Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0769
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0715 - 5542648-5543219,5543352-5543544 31 0.56
07_03_0808 - 21668100-21669092 31 0.74
08_02_1169 + 24858843-24858993,24859495-24859788,24860303-248603... 30 1.3
01_03_0123 - 12728636-12729246,12729336-12729738 30 1.7
11_02_0135 + 8683470-8683833,8686321-8686601 29 4.0
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 28 5.2
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 28 5.2
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 5.2
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 28 5.2
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 5.2
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 28 6.9
03_05_0571 - 25713519-25714064,25714673-25714804 28 6.9
03_02_0915 + 12360079-12360095,12360225-12361353 28 6.9
12_02_0160 + 14585559-14586230 27 9.2
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 27 9.2
04_01_0340 + 4435344-4435637 27 9.2
03_06_0032 + 31182115-31182390,31182801-31183459,31183597-311837... 27 9.2
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803 27 9.2
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 44 PTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
PT +PP A GTN T R PAPA P P
Sbjct: 155 PTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPP 190
>07_03_0808 - 21668100-21669092
Length = 330
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 58 RTPVRRRGHQHHPPFKG-RPSTRPRHESRP 144
R P R RGHQH P + PST PR P
Sbjct: 140 RRPRRARGHQHQPALRHLPPSTAPRRTPPP 169
>08_02_1169 +
24858843-24858993,24859495-24859788,24860303-24860349,
24860779-24861277,24862233-24862274,24862376-24862666,
24862793-24862932,24863278-24863770,24864105-24864484
Length = 778
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 464 LQNFDVTE*MYPRSXPKEKTGRAKEECADYPGSRPLGS 577
L + DVTE +P + PK G A PG+ P GS
Sbjct: 718 LNSSDVTEPPFPSAAPKNAPGGAANGSTPAPGASPSGS 755
>01_03_0123 - 12728636-12729246,12729336-12729738
Length = 337
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 107 GDRQPAPATNPDPEPSXA*RP 169
G +QP PAT+P P P A RP
Sbjct: 87 GVKQPPPATHPHPHPEEAPRP 107
>11_02_0135 + 8683470-8683833,8686321-8686601
Length = 214
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 146 RGRDSWRGRVDGRPLNGGWCWCPLRRTG 63
R R WR R GR WCW RR G
Sbjct: 3 RQRRRWRRRRGGRGEVDAWCWRSRRRGG 30
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 82 HQHHPPFKGRPSTRPRHESRPRA 150
HQ PP G PST PR +++ +A
Sbjct: 24 HQSPPPANGLPSTPPRQQAQAQA 46
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 32 PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP 169
P P + +A P G + RL Q P+ NP+P P+ +P
Sbjct: 17 PTPPAPTPLAAPTPNGLNDRLLRLTRTHQRGPSQNPNPNPNPNPKP 62
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 50 STVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP*LKQTMLXP 196
S +P +GG + + D P+PA P P P A P +Q P
Sbjct: 1923 SDQSPVPQSGGADASPSQMADASPSPAREPSPNPVQAGAPPEQQNPTPP 1971
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +2
Query: 47 TSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP*LKQTMLXPCVNSVSESQD 226
+ T PP + L R PAP+ P P PS + R + T P S + S
Sbjct: 58 SDTDEPPARPSPIAQLKTLASIRAPAPSPKPSPSPSPSPR---RSTSASP---SATLSSL 111
Query: 227 VTRTNSDDA 253
V+RT S++A
Sbjct: 112 VSRTFSNNA 120
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +2
Query: 32 PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
P P P + P G T RR R A AT P P P
Sbjct: 3 PLPRPAAAATPRRHRHGPATPRRRRRRHAAAVATPPPPPP 42
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 38 PHPTSTVAPPCGA--GGTNTTRRLRGDRQPAPATNPDPEPS 154
P P +T AP GA GGT+ GD + +++ P P+
Sbjct: 78 PPPVTTPAPAGGAGDGGTDAGAAATGDASSSSSSSASPHPT 118
>03_05_0571 - 25713519-25714064,25714673-25714804
Length = 225
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 38 PHPTSTVAPPCGAGGTNTT 94
P P+ST A GAGGT TT
Sbjct: 77 PCPSSTAAAASGAGGTTTT 95
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 47 TSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*R 166
T+T A + GT+ TR G P PA P S A R
Sbjct: 237 TTTGAAASASSGTDKTRSSAGSNAPQPAAPQSPAASQASR 276
>12_02_0160 + 14585559-14586230
Length = 223
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 98 GGWCWCPLRRTGVRPWTWGAG 36
G W WC RR V W W G
Sbjct: 5 GAWRWCGGRRHRVGAWWWCGG 25
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 32 PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
P P P+ PP + RR R ++P P P P P
Sbjct: 28 PPPPPSDPPPPPPPHHHHHHRRRHRHSKKPKPQPQPQPPP 67
>04_01_0340 + 4435344-4435637
Length = 97
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 104 RGDRQPAPATNPDPEPSXA*RP 169
R D PA A PDP P+ A RP
Sbjct: 13 RPDPSPATAGRPDPSPATAGRP 34
>03_06_0032 +
31182115-31182390,31182801-31183459,31183597-31183740,
31184025-31184061
Length = 371
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 41 HPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
HP + V+PP AG L G P P P P P
Sbjct: 103 HPATLVSPPLAAGLHPYPPYLHGVDAPPPQWPPRPAP 139
>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
Length = 298
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 50 STVAPPCGAGGTNTTRRLRGDRQPAPATNPDP 145
+T PP AG + + QPAP T P P
Sbjct: 125 ATTPPPPAAGDDDNNPTTQASSQPAPPTPPAP 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,575
Number of Sequences: 37544
Number of extensions: 289974
Number of successful extensions: 1349
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -