Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0769
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)                       31   0.57 
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   31   0.57 
SB_8748| Best HMM Match : Astacin (HMM E-Value=0)                      31   0.57 
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      30   1.3  
SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     29   4.1  
SB_38585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_45089| Best HMM Match : Fer2 (HMM E-Value=6.9)                      28   7.1  
SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)                      28   7.1  
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_14235| Best HMM Match : Pyr_excise (HMM E-Value=4.2)                28   7.1  
SB_7682| Best HMM Match : Fer2 (HMM E-Value=6.9)                       28   7.1  
SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_39870| Best HMM Match : Fer2 (HMM E-Value=6.9)                      28   7.1  
SB_34972| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_30921| Best HMM Match : ADK_lid (HMM E-Value=3.2)                   28   7.1  
SB_19967| Best HMM Match : Pyr_excise (HMM E-Value=3.4)                28   7.1  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 32  PXPHPTSTVAP-----PCGAGGTNTTRRLRGDRQPAPATNPDPEPS 154
           P PHP+S  +P     P      N +     D  P P++NP  EPS
Sbjct: 479 PSPHPSSNPSPNPSPNPSSDPSPNPSSNPSSDPSPNPSSNPSSEPS 524


>SB_19676| Best HMM Match : Ctr (HMM E-Value=3.1)
          Length = 311

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 2   PDAARLV**CPXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPD 142
           P A  L    P  HP +  +PP    G   T  + G  +P P  +PD
Sbjct: 169 PSATYLTTVVPNEHPEAIPSPPSTDNGHRITNNMAGRGRPEPQPSPD 215


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 2    PDAARLV**CPXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPD 142
            P A  L    P  HP +  +PP    G   T  + G  +P P  +PD
Sbjct: 3364 PSATYLTTVVPNEHPEAIPSPPSTDNGHRITNNMAGRGRPEPQPSPD 3410


>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 757

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATN-PDPEPSXA*RP*LKQTMLXPCVNS 208
           P     ++ APP GA  +  T    G    APA+N P    + A +P    T   P  +S
Sbjct: 554 PASSAPASGAPPSGAPASGATTPTTGPISGAPASNGPTSGSTGANQPTSGSTSANPTTSS 613

Query: 209 VSESQDVTRTNSD 247
            + SQ  T +  D
Sbjct: 614 ATGSQPSTPSGDD 626


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 41  HPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP 169
           HP      PC  G   T+RR+  D+  AP   PDPE   A +P
Sbjct: 308 HPDDPEELPCPDG---TSRRMIADQSVAPPRAPDPERVLALQP 347


>SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 29/103 (28%), Positives = 43/103 (41%)
 Frame = -3

Query: 618 NXSXXSCS*KKNIELPKGREPG*SAHSSFARPVFSFGXDLGYIHSVTSKFCKFYSFQGHH 439
           N S   CS ++ + L  GR+   S HS    P +S G  L  +     +  K ++ Q H 
Sbjct: 383 NPSKGDCSNEQTLRL--GRQDTVSIHSQKTLP-YSCGNTLNLVTPRFQEQYKNHNPQTHE 439

Query: 438 RIYQKEARQRIASAPSPARPFFKREFIGLSYPRESVLLTLSNS 310
             Y   +   I ++ S        E +GL YPR SV   L  +
Sbjct: 440 SAYLINSTSGITTSMSNQNR--GDEPLGLEYPRNSVTWNLEQT 480


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 44  PTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP 169
           PT ++ P  G GG  T +      QPA  T P P PS    P
Sbjct: 75  PTVSLVPS-GGGGWGTAKEKTETSQPATTTVPAPPPSSTTAP 115


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
           P PHPT++V PP G     +        QP P     P+P
Sbjct: 138 PMPHPTASVYPPPGGYPPTSYPPQPYPAQPYPQQGYPPQP 177


>SB_38585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 414 AALPSDISDDDPGNCR--TCKTSMLLSEC 494
           + L  D S+DD   C   TC+T+ML SEC
Sbjct: 74  STLNQDDSEDDMITCPLPTCQTTMLFSEC 102


>SB_45089| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 249

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 148 LNQDDSEDDMITCPLPTCQTTMLFSEC 174


>SB_28494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 137 LNQDDSEDDMITCPLPTCQTTMLFSEC 163


>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 596 PERKILNCPKGENRDNQRILPSPALFSLSAKTSGTFTQ 483
           P  K+ + PKG++  +QR+  + + FS + KTS +  +
Sbjct: 6   PCDKVTDEPKGDSTSSQRLFYARSAFSKTRKTSNSLNE 43


>SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)
          Length = 214

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 113 LNQDDSEDDMITCPLPTCQTTMLFSEC 139


>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420  LPSDISDDDPGNCR--TCKTSMLLSEC 494
            L  D S+DD   C   TC+T+ML SEC
Sbjct: 1645 LNQDDSEDDMITCPLPTCQTTMLFSEC 1671


>SB_14235| Best HMM Match : Pyr_excise (HMM E-Value=4.2)
          Length = 237

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 173 LNQDDSEDDMITCPLPTCQTTMLFSEC 199


>SB_7682| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 137 LNQDDSEDDMITCPLPTCQTTMLFSEC 163


>SB_59353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 459 LNQDDSEDDMITCPLPTCQTTMLFSEC 485


>SB_39870| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 145

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 90  LNQDDSEDDMITCPLPTCQTTMLFSEC 116


>SB_34972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 153 LNQDDSEDDMITCPLPTCQTTMLFSEC 179


>SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 814

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 748 LNQDDSEDDMITCPLPTCQTTMLFSEC 774


>SB_30921| Best HMM Match : ADK_lid (HMM E-Value=3.2)
          Length = 205

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 104 LNQDDSEDDMITCPLPTCQTTMLFSEC 130


>SB_19967| Best HMM Match : Pyr_excise (HMM E-Value=3.4)
          Length = 357

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 420 LPSDISDDDPGNCR--TCKTSMLLSEC 494
           L  D S+DD   C   TC+T+ML SEC
Sbjct: 256 LNQDDSEDDMITCPLPTCQTTMLFSEC 282


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 32   PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEP 151
            P P P    APP G G         G   P P   P P P
Sbjct: 954  PPPPPPGGSAPPPGGGAPPLPPPPGGSAPPPPPPPPPPPP 993


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 38   PHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDP 145
            P P STVA P G  G    +  +G  +PA +TN +P
Sbjct: 3410 PGPASTVAGPVGTRGFPGLKGEKG--EPAESTNVNP 3443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,035,041
Number of Sequences: 59808
Number of extensions: 284844
Number of successful extensions: 1051
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)