Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0769
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106577-12|AAC78182.1|  106|Caenorhabditis elegans Hypothetical...    33   0.22 
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    29   2.7  
AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    29   3.6  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF106577-15|AAC78181.1|  104|Caenorhabditis elegans Hypothetical...    28   6.2  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    28   6.2  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF106577-12|AAC78182.1|  106|Caenorhabditis elegans Hypothetical
           protein F46F5.6 protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPE 148
           P P   +TVAP  GA  T+T +    D  P PA  P PE
Sbjct: 37  PAPDNANTVAPNVGAASTSTAKESATD--PPPAGTPAPE 73


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNP 139
           P P  TST  PP G+   N  R     R+P P   P
Sbjct: 144 PPPAATSTYRPPHGSNYDNYGREPASSRRPYPPQQP 179


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 44  PTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA 160
           P+   +PPC   G        G R P P   PDP+P+ A
Sbjct: 82  PSQFHSPPCTTAGNTPAGGTPGYRAPVP---PDPQPTSA 117


>AL032635-4|CAA21601.1|  140|Caenorhabditis elegans Hypothetical
           protein Y51A2A.6 protein.
          Length = 140

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 70  RRRGHQHHPPFKGRPSTRPRHESRPRA 150
           ++ GH HH    GRPS RPR    PRA
Sbjct: 48  KKHGHGHHHHNHGRPS-RPRPTRPPRA 73


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = -2

Query: 496 VHSLSNIEVLQVLQFPGSSSDISEGSAATXSFRTVSCQTFLQT 368
           V+++S   +L++ ++  +SSD +  + A  S    SC+ F++T
Sbjct: 65  VYNISISSMLEIARYEWTSSDEARTNCAAISQTPASCENFIRT 107


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 38  PHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNP--DPEPSXA*RP*LKQTMLXPCVNSV 211
           P P+ T  PP  A    T +      +PAPAT+    P PS +    +++      ++S 
Sbjct: 642 PRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQSLTQQIRKLPAVLYIDSK 701

Query: 212 SESQDVTRT 238
           +ES   T T
Sbjct: 702 NESTKKTET 710


>AF106577-15|AAC78181.1|  104|Caenorhabditis elegans Hypothetical
           protein F46F5.9 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGD--RQPAPATNPDPE 148
           P      TVAP  GA GT  T     +    P PA  P PE
Sbjct: 31  PAADDAGTVAPNVGAAGTTATPSTAKESATDPPPAGTPAPE 71


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDRQPAPATNPDPEPSXA*RP 169
           P P P +  AP  G  G            PA A  P+P P+ A  P
Sbjct: 345 PAPAPAAAAAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAPAPAAAP 390


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGD-RQPAPATNPDPEP 151
           P P P      P GA G+N  +   G    P+ A+ P P+P
Sbjct: 828 PPPPPAQGAPSPSGAAGSNGKQPRYGTPAPPSRASAPTPQP 868


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,654,010
Number of Sequences: 27780
Number of extensions: 212472
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)