Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0769
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 464 LQNFDVTE*MYPRSXPKEKTGRAKEECADYPGSR 565
           L+  D  E  +PRS  +  T   K+ C D P  R
Sbjct: 578 LKGIDAIE--FPRSITRNATALIKKLCRDNPAER 609


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 550 LSRFSPFGQFNI 585
           L RFSPFG+F +
Sbjct: 586 LDRFSPFGRFKL 597


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 450 QGHHRIYQKEARQR 409
           Q HHR YQ++ +Q+
Sbjct: 157 QDHHRPYQQQQQQQ 170


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 122 RVDGRPLNGGWCWCPLRRTGVRPWT 48
           R  G P N  +C  P  R     WT
Sbjct: 137 RTCGNPWNTRYCLTPTERLEALCWT 161


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = -1

Query: 122 RVDGRPLNGGWCWCPLRRTGVRPWT 48
           R  G P N  +C  P  R     WT
Sbjct: 190 RTCGNPWNTRYCLTPTERLEALCWT 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,423
Number of Sequences: 438
Number of extensions: 2226
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)