Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0769
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei...    28   4.4  
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei...    28   4.4  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    28   4.4  
At4g19270.1 68417.m02841 hypothetical protein                          27   7.7  
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    27   7.7  

>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 824

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 513 FGXDLGYIHSVTSKFCKFYSFQGHHRIYQKEARQRIASAPSPARP 379
           F    GY H+   +F   +S   HH     EA  R+ ++P PA P
Sbjct: 704 FNPSAGYSHNFGRRFTMDHSDNSHH---LTEAPSRLWASPPPAAP 745


>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
           (HEN4) contains similarity to RNA-binding protein;
           identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
           contains Pfam domain PF00013: KH domain; identical to
           cDNA HEN4 (HEN4) GI:28261402
          Length = 857

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 513 FGXDLGYIHSVTSKFCKFYSFQGHHRIYQKEARQRIASAPSPARP 379
           F    GY H+   +F   +S   HH     EA  R+ ++P PA P
Sbjct: 704 FNPSAGYSHNFGRRFTMDHSDNSHH---LTEAPSRLWASPPPAAP 745


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +2

Query: 32  PXPHPTSTVAPPCGAGGTNTTRRLRGDR-QPAPATNPDPEPSXA*RP*LKQTMLXPCVNS 208
           P P P    +PP     T       G   +PAPA  P P P  A  P   +    P V  
Sbjct: 91  PAPKPVPCPSPPKPPAPTPKPVPPHGPPPKPAPAPTPAPSPKPAPSPPKPENKTIPAVFF 150

Query: 209 VSESQDVTRTNSDDALQIR 265
             +S   T  N++   +I+
Sbjct: 151 FGDSVFDTGNNNNLETKIK 169


>At4g19270.1 68417.m02841 hypothetical protein 
          Length = 141

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 95  GWCWCPLRRTGVRPWTWGAG 36
           G C CP     VR W+W AG
Sbjct: 107 GGCGCPAAEVVVRRWSWLAG 126


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 203 NSVSESQDVTRTNSDDALQIRILL*PRTVXNDEQENELDRVKSTDSL 343
           +S  ES ++   +  DAL+ + +  P      E+EN LD  KS+DS+
Sbjct: 32  SSHDESVNIGELSGSDALEAKEVT-PEVDKTVEEENPLDVPKSSDSI 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,049,710
Number of Sequences: 28952
Number of extensions: 203488
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)