Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0768
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 6e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 125 6e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 5e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 99 6e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 8e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 5e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 61 1e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 49 6e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 34 0.025
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.100
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.40
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 29 0.70
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 27 3.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.8
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (508), Expect = 6e-55
Identities = 107/147 (72%), Positives = 110/147 (74%)
Frame = +2
Query: 254 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 433
PIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 434 PAMYVAIQAVLSLYASGRTTGIVLDPATVSPTPCPSTRDTHSPTPSCVWDLAGRDLTDYL 613
PA YVAIQAVLSLYASGRTTGIVLD P P DLAGRDLTDYL
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYL 189
Query: 614 HEDSSPSAATRSLPTAEREIVRDIKEK 694
+ T S TAEREIVRDIKEK
Sbjct: 190 MKILMERGYTFS-TTAEREIVRDIKEK 215
Score = 143 bits (347), Expect = 2e-35
Identities = 64/69 (92%), Positives = 68/69 (98%)
Frame = +3
Query: 51 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 230
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 231 RGILTLKYP 257
RGILTLKYP
Sbjct: 62 RGILTLKYP 70
Score = 58.4 bits (135), Expect = 1e-09
Identities = 33/73 (45%), Positives = 39/73 (53%)
Frame = +1
Query: 511 GDGVSHTVPIYEGYALPHAIXXXXXXXXXXXXXXXXXXXTERGYSFTTNRRAGNRS*HQG 690
GDGV+HTVPIYEGYALPHAI ERGY+F+T +
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILM-ERGYTFSTTAEREIVRDIKE 214
Query: 691 EAVYVALDFEQXM 729
+ YVALDFEQ +
Sbjct: 215 KLCYVALDFEQEL 227
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 125 bits (302), Expect = 6e-30
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 248 QIPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 424
Q PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 425 FNTPAMYVAIQAVLSLYASGRTTGIVLDPATVSPTPCPSTRDTHSPTPSCVWDLAGRDLT 604
N PA+ ++Q VL+LYAS RTTGIVL+ P P+ ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 605 DYLHEDSSPSAATRSLPTAEREIVRDIKEK 694
DYL S + +AE+EIVR+IKEK
Sbjct: 192 DYLQLQLRKS-GHELVSSAEKEIVREIKEK 220
Score = 78.6 bits (185), Expect = 9e-16
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +3
Query: 69 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 248
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 249 KYP 257
+ P
Sbjct: 72 QRP 74
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 109 bits (261), Expect = 5e-25
Identities = 59/147 (40%), Positives = 87/147 (59%)
Frame = +2
Query: 254 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 433
P+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 434 PAMYVAIQAVLSLYASGRTTGIVLDPATVSPTPCPSTRDTHSPTPSCVWDLAGRDLTDYL 613
+YVAIQAVLSLYA G ++G+V+D P D+AGRD T YL
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189
Query: 614 HEDSSPSAATRSLPTAEREIVRDIKEK 694
+ TA+ E VR++KEK
Sbjct: 190 ISLLLRKGYAFN-RTADFETVREMKEK 215
Score = 65.7 bits (153), Expect = 7e-12
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Frame = +3
Query: 57 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 230
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 231 RGILTLKYP 257
R +L +KYP
Sbjct: 62 RSLLQVKYP 70
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 99.1 bits (236), Expect = 6e-22
Identities = 60/150 (40%), Positives = 79/150 (52%), Gaps = 12/150 (8%)
Frame = +2
Query: 254 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 433
PI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN
Sbjct: 93 PIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNC 152
Query: 434 PAMYVAIQAVLSLYASGRT--------TGIVLDPATVSPTPCPSTRDTHSPTPSCVWDLA 589
+Y+A+QAVL+L AS + TG V+D P + LA
Sbjct: 153 AGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA 212
Query: 590 GRDLTDY----LHEDSSPSAATRSLPTAER 667
GRD+T + L + + P + SL TAER
Sbjct: 213 GRDVTYFVQSLLRDRNEPDS---SLKTAER 239
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 69 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 218
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.1 bits (169), Expect = 8e-14
Identities = 33/84 (39%), Positives = 48/84 (57%)
Frame = +2
Query: 257 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 436
I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ P
Sbjct: 69 IRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCP 128
Query: 437 AMYVAIQAVLSLYASGRTTGIVLD 508
A Y+A Q + +ASG+ T ++D
Sbjct: 129 ATYLAKQETCAAFASGKGTACLVD 152
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 54 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 155
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.1 bits (154), Expect = 5e-12
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 433
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 434 PAMYVAIQAVLSLYASGR--TTGIVLD 508
P++ I + S Y + + ++GIVL+
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLN 171
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 69 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 164
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 61.3 bits (142), Expect = 1e-10
Identities = 24/82 (29%), Positives = 49/82 (59%)
Frame = +2
Query: 263 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 442
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 443 YVAIQAVLSLYASGRTTGIVLD 508
Y+ QAV +A+ ++T +++D
Sbjct: 134 YLTKQAVCVAFANSKSTALIVD 155
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 54 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 224
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 49.2 bits (112), Expect = 6e-07
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +2
Query: 239 PDPQIPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 406
P+ PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 407 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 508
Q FE P +A + ++ LYA G G+V+D
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVID 200
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 114 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPSNTESSL 278
G+ PRA F ++ P H G+++ M KD G+E S +G + + P N S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEISEV 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.100
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 314 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 457
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 211 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 50
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.70
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 359 LTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDPATVSPTPCP 538
L+ P NP + + + I+ E V + VLS + R +V DP+TV P P
Sbjct: 361 LSSVPTNPTPSEDDIQLILKELQKYLVFPVDREDVLSAWCGIRP--LVRDPSTVPPGTDP 418
Query: 539 STRDT 553
+T +T
Sbjct: 419 TTGET 423
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 222 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 133
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 251 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 72
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 458 AVLSLYASGRTTGIVLDPATVSPTPCPSTRDTHSPTPSCVWDLAGRDLTDY 610
A L Y+ G + I D V P P S CVWD+ DL +Y
Sbjct: 35 ASLRSYSIGNVSRIY-DGIRVPPKPEEPLNCCQSGCAICVWDVYADDLEEY 84
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 214 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 98
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 192 QKDSYVGDEAQSKRGILTLKYPSNTESSLTGMTWRRFGIIPSTMSCVS 335
+KD+ V E SK T YP ++ S LT + + + +SC S
Sbjct: 143 EKDNLVNSEYSSKYSSTTRIYPYHSLSQLTDLLTDGSFYVSTNISCFS 190
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = +2
Query: 392 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDPATVSPTPCPSTRDTHSPTPS 571
RE++ Q+ + P+ Y+ LS Y S + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYRSPNSY----------PSLLPSTHSPHSPAPL 183
Query: 572 CVWDLAGRDLTDY 610
A L Y
Sbjct: 184 STMQTALMRLRTY 196
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 356 LLTEAPLNPKANREKMTQIMFETFN 430
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 96 TYRSHCLLPTRQLLRRTS*ISEI 28
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 251 FEGQDTSFALCLISYIRVLLSHTDHHA 171
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +3
Query: 462 CSRCTRPVVPPVSCWTRRRCLPHRAHLRGIR 554
CS CT + P S W+ C H HL IR
Sbjct: 197 CSVCTDTINPSTSIWSCGTCY-HVFHLSCIR 226
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 462 CSRCTRPVVPPVSCWTRRRCL 524
C RP++ + W +RRCL
Sbjct: 185 CDPRVRPLIVMIKYWAKRRCL 205
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 546 GIRTPPRHPASGT*PVATSQT-TFMKIPHRARLLVHYQ 656
GI+ PP+HP S T + S F++I R+ +L +Q
Sbjct: 538 GIKNPPKHPLSSTAEIVLSSCYRFLQI--RSFVLTSHQ 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,435
Number of Sequences: 5004
Number of extensions: 75499
Number of successful extensions: 275
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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