Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0768
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.33 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.3  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 512 ATVSPT--PCPSTRDTHSPTPSCVWDLAGRDLTDYLHEDSSPSAATRSLPTAEREIVRDI 685
           ATV  T  PC        P P    DL G     Y+HED S        PT E+ +VR+I
Sbjct: 461 ATVGTTVAPCFEEPLPSLPLPGADDDLFGPASPAYVHEDVS--------PTFEKPLVREI 512

Query: 686 KE 691
           ++
Sbjct: 513 EK 514


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 326  LRVAPEEHPVLLTEAPLNPKANREKM 403
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 554 HSPTPSCVWDLAGRD--LTDYLHEDSSPSAATRSLPTAEREI 673
           H+P P C+ +L G    L D      S      SL  ++ EI
Sbjct: 330 HTPEPDCIHELLGHMPLLADPSFAQFSQEIGLASLGASDEEI 371


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 557 SPTPSCVWDLAGRDLTD 607
           +PTP   W+L G+ L++
Sbjct: 420 NPTPEITWELDGKRLSN 436


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 473 YASGRTTGIV-LDPATVSPTPCPSTRDTHSPTPSCVWDLAGRD 598
           +  G T  +  L+  T   TP   T D H     CV   A  D
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADED 107


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +2

Query: 473 YASGRTTGIV-LDPATVSPTPCPSTRDTHSPTPSCVWDLAGRD 598
           +  G T  +  L+  T   TP   T D H     CV   A  D
Sbjct: 65  FMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKAADED 107


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 90  GMCKAGFAGD 119
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,073
Number of Sequences: 438
Number of extensions: 5846
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)