Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0767
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   5.8  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   7.6  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.6  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 75  YMYVVNVLINNVLRDKISSLIKKVM*IIKICYTI 176
           Y+Y  + L  N+   + +SLI + + ++ IC+T+
Sbjct: 560 YIYDFDTLKENLKHSENASLIHQFLLVLSICHTV 593


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 166 HIFMIYITFFIRDEILSRNTLLISTFTTYIY 74
           + F  Y TF +R  I     L++ST+T ++Y
Sbjct: 289 YFFHKYFTFPLRLLIFEPILLVVSTYTAFVY 319


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 674 YHVHWTYQKSLPHSYWHLNT--AFTFTFSISM*IIKLARIC*KM 549
           Y + WTY   L H  W L +   FT  F + +    LA  C +M
Sbjct: 117 YKLEWTYSGVLLHRPWKLFSLKPFTAAFVLLLAASYLATACFRM 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,389
Number of Sequences: 5004
Number of extensions: 40926
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)