Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0767
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.2  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 41  SSHNKQNSLIKIYVCSKCTY 100
           +SH K +S +  Y C+ CTY
Sbjct: 33  NSHLKSHSNVYQYRCANCTY 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 247 SYNVVCCYTASVFHYCHC 300
           S   +C Y A  F  CHC
Sbjct: 732 SEQFLCRYEAHCFALCHC 749


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 3   HNNESNKYIVTINHHTTNKTV*LKYMYVVNV 95
           +NN +N Y    N++  N    L   Y++N+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 3   HNNESNKYIVTINHHTTNKTV*LKYMYVVNV 95
           +NN +N Y    N++  N    L   Y++N+
Sbjct: 94  YNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 26  YSYNKSSHNKQNSLIKIY 79
           Y+YN +++N  N   K+Y
Sbjct: 96  YNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 26  YSYNKSSHNKQNSLIKIY 79
           Y+YN +++N  N   K+Y
Sbjct: 96  YNYNNNNYNNNNYNKKLY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,203
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)