Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0767
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    30   1.2  
At1g08440.1 68414.m00933 hypothetical protein contains Pfam prof...    29   2.1  

>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 284 NTLAV*QHTTLYDKINSKSTLKM*LQVMLCTCFD--YGNSITYLY 156
           NT  + Q+  L  ++N K  + M + ++ C C+D  +GN+  YLY
Sbjct: 476 NTKLLPQNGRLPKRVNLKEMM-MGIYILCCACYDFAFGNAFLYLY 519


>At1g08440.1 68414.m00933 hypothetical protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 501

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 492 SASLFRDLVNVSYI*NELMHFLTNAGKFNNLHRNGKSES 608
           + SL  D+VN++   +E +H L +A KF N  +  KS S
Sbjct: 371 TVSLLIDIVNLTEKISESVHELASAAKFKNKKKPSKSNS 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,094,276
Number of Sequences: 28952
Number of extensions: 182570
Number of successful extensions: 329
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)