Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0765
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    39   6e-04
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    33   0.022
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    33   0.029
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.62 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   0.82 
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   3.3  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   4.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.6  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   7.6  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +3

Query: 255 SLVGHIPTGLPVPQVPAI--ELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQ 428
           S++G +P+G     VP I  +L   +A +     +V     +S+A  F     Y++  +Q
Sbjct: 363 SILGTVPSGFRDMGVPVISRKLCADLASELPVSVIVLLLEHISIAKSFGRVNDYKVIPDQ 422

Query: 429 ELLALGASNVFASFF 473
           EL+A+GA+N+   FF
Sbjct: 423 ELIAMGATNLIGVFF 437


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 255 SLVGHIPTGLPVPQVPAI--ELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQ 428
           S++  +P G     VP I  +L   +A +     +V     +S+A  F     Y I  +Q
Sbjct: 349 SIIKTVPRGFQHVGVPLITKKLCRDLASELPVSVIVLLLEHISIAKSFGRVNDYRIVPDQ 408

Query: 429 ELLALGASNVFASFF 473
           EL+A+G +N+   FF
Sbjct: 409 ELIAMGVTNLIGIFF 423


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 282 LPVPQVPAIELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQELLALGASNVF 461
           LP+P+   +  I Q        + + +  ++      + +    I +N+EL++LGA+N+ 
Sbjct: 318 LPLPEKNKLHFITQSLQTGVMCSFLAFIDTVIAVKAISLQTNNLIRSNRELISLGAANIG 377

Query: 462 ASFFC 476
           +S FC
Sbjct: 378 SSLFC 382


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 426 QELLALGAS-NVFASFFCLHTFLCQSVAL 509
           +++ AL A+ ++    FCLHTFLC S  L
Sbjct: 465 RKITALSAALSLGTVLFCLHTFLCDSTVL 493


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 28  YKVVFTIVEVVKNLPNLNWAAFVISLITCIVIALNNELLKPWVSKRSRVPVPVELLAIV 204
           Y  + TI+E +K  PN+        LIT IV AL N       S+   + + V+LL I+
Sbjct: 564 YSCLETIIESLKTSPNIIETIISEDLITTIVNALTNS-----TSQNKSMHLQVQLLHII 617


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 278 GRYMSDQTMPNCSFSPPNLETNVPTTMAN 192
           G  ++D  M  C +SP   + +VP T+ N
Sbjct: 238 GMLINDSFMVGCIYSPAEAKEHVPKTLRN 266


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 299 YLRHRKAGRYMSDQTMPNCSFSPPNLETNVPT 204
           YL++  A +Y+ D   PNC+F   N ++  PT
Sbjct: 164 YLKYCMAFQYLQD---PNCAFLLTNQDSTFPT 192


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 60   EKSSEPELGCVRDIAYHLHRHSFE 131
            E+ ++  L C++ + Y L RHS E
Sbjct: 931  EECTQYVLSCLKPLGYELKRHSLE 954


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 432  ILDWRRSRISPWPRILK 382
            I+DWR+  +S W  +LK
Sbjct: 3220 IIDWRKFELSNWNNLLK 3236


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 325 TCGISSMAGTCGTGRPVGICPTKL 254
           TC +S M G     RPVG CP +L
Sbjct: 512 TCALSRMRG-----RPVGFCPLQL 530


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 201 DGQ*LYRNWHSTAFTHPRLKQFIVQSYDDASDKRYHERSPVQVRKIFHHLXYCKDDF 31
           DG+   RN  S   +H   K+F    Y   +   + +R PVQ++   HHL Y    F
Sbjct: 6   DGEKYIRNLASYIRSHE--KRFARAPYRAPNHSIFSDR-PVQLQLTVHHLYYLLTKF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,511
Number of Sequences: 5004
Number of extensions: 39030
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)