Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0765
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)                67   1e-11
SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)        52   3e-07
SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   2e-05
SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_38046| Best HMM Match : Homoserine_dh (HMM E-Value=0)               31   0.49 

>SB_980| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 33/83 (39%), Positives = 51/83 (61%)
 Frame = +3

Query: 258 LVGHIPTGLPVPQVPAIELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQELL 437
           ++G IP GLP   +P+ + +  +  DAF I++V +  ++S+A +FA K    +DANQELL
Sbjct: 324 VLGEIPKGLPPISIPSFKRMRTIVPDAFVISVVIFATNISLARMFAKKNGQTVDANQELL 383

Query: 438 ALGASNVFASFFCLHTFLCQSVA 506
           A G  NV  SFF     +C ++A
Sbjct: 384 AYGMCNVGGSFFSCFP-ICNALA 405



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 45/83 (54%)
 Frame = +1

Query: 7   IXKTSGNYKVVFTIVEVVKNLPNLNWAAFVISLITCIVIALNNELLKPWVSKRSRVPVPV 186
           + + +G +  +     ++K + + N  A +I+ + C+VI +  + +     KR  +P+P 
Sbjct: 241 VPQNTGAFASIKVAAHMLKFIASSNPGA-IITGVLCLVILVTLKFINEKYKKRLPIPIPA 299

Query: 187 ELLAIVVGTLVSKFGGLKEQFGI 255
           ELL + +GT +S    L ++FG+
Sbjct: 300 ELLVVALGTAISYGASLSDEFGV 322


>SB_42484| Best HMM Match : Sulfate_transp (HMM E-Value=0.00024)
          Length = 349

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +3

Query: 255 SLVGHIPTGLPVPQVPAIELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQ 428
           +++G IP G P    P++ L+  + VDA  I +V +  ++S+A +FA K KY ID NQ
Sbjct: 292 AVLGEIPKGFPPFSTPSLPLMETMIVDAIVIAIVVFATNVSLAKMFAQKNKYTIDPNQ 349


>SB_4412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1095

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 37/54 (68%)
 Frame = +3

Query: 309 ELIPQVAVDAFTITMVTYTISMSMALIFAAKEKYEIDANQELLALGASNVFASF 470
           +++ Q+      + ++ +  S+++A  FA K +Y++DA+QEL+ALG +NV +SF
Sbjct: 745 DVLSQLGPGLAIVPLIGFLESIAIAKAFARKNRYKVDASQELIALGLANVLSSF 798


>SB_52915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 311 ADPASGRGRLHHNDGDLYHIDVHGFNIRGQGEIRDRRQSRIISAW 445
           AD  SG GR++++DG +Y  + +     G+G +R   ++R    W
Sbjct: 118 ADKRSGWGRMYYSDGAVYEGEWYDDKQNGEGMLRLANENRYEGEW 162


>SB_38046| Best HMM Match : Homoserine_dh (HMM E-Value=0)
          Length = 537

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = +3

Query: 207 RHVGLQVRGAEGAIRHSLVGHIPTGLPVPQVPAIELIPQVAVDAFTITMVTYTISMSMAL 386
           R  G  +  A+ AIR     +  TG+ +      EL+    +D     +  YT++  + L
Sbjct: 256 RRAGRGIEVAQIAIRSPKPQYDTTGISMTS-DVFELVNNPEIDIVIELIGGYTLAKELVL 314

Query: 387 IFAAKEKYEIDANQELLALGASNVFA 464
                 K+ + AN+ L+A+  + +FA
Sbjct: 315 KAIENGKHVVTANKALIAVHGNEIFA 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,810
Number of Sequences: 59808
Number of extensions: 317262
Number of successful extensions: 1631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)