Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0764
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   1.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 309 LISWRKLSRPR*RIWVWSTWISI*YTG 389
           LISW  L +P+  I ++  W SI  +G
Sbjct: 430 LISWNPLMQPKQPIKLFEQWKSILESG 456


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 157 RSISATGTWTAPTSTSMRRRWGTP*EPSLKKENQKRGYLHNVQVMVHV 300
           R I+    W    +   +R W  P EP+  +   K G +H  +V++ V
Sbjct: 148 RLITGDEKWVVYNNIKRKRSWSRPREPA--QTTSKAG-IHRKKVLLSV 192


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 235 PSLKKENQKRGYLHNV 282
           P L   N+K G+ HN+
Sbjct: 118 PDLFFSNEKEGHFHNI 133


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 235 PSLKKENQKRGYLHNV 282
           P L   N+K G+ HN+
Sbjct: 118 PDLFFSNEKEGHFHNI 133


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 202 SMRRRWGTP*EPSLKKENQKRGYLHNVQVMVHVPPP*SRGGSYQDLV 342
           SM+     P  P +  ++        V+  VH P   S+GG+ ++ +
Sbjct: 263 SMKTARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLENTI 309


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 426 FGNRSSPSLKAWGQCIR*RSKYSKPRFFNEVL 331
           F N+S P ++ W Q        S  R  N+VL
Sbjct: 48  FKNKSLPVIEIWDQMTVKELANSAKRDINDVL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,672
Number of Sequences: 438
Number of extensions: 3883
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)