Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0763
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.85 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.0  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   7.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 507 HNTSHATXVMDTAGWKNMISSQ 572
           HN ++A       GWKNM+S +
Sbjct: 666 HNPNYAEVTDWYTGWKNMLSDE 687


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 382 PMHTYRPQLADRR 344
           P+H +RP LA +R
Sbjct: 302 PLHDHRPALAQQR 314


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 434 RLPQTRSYSQTCTPPTSS 487
           RLP   S+ Q  +PP+S+
Sbjct: 51  RLPANFSFGQVNSPPSST 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,374
Number of Sequences: 336
Number of extensions: 1987
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)