Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0763
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    31   0.097
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    28   0.90 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   4.8  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.8  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   8.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.4  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 124 ERFSDVTLAVGGREFQAHKAILAARXSCVR 213
           + FSDVT+  G   F +HK IL AR S +R
Sbjct: 616 QSFSDVTIYCGTSMFHSHKFILCARSSFLR 645


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 474 RRPAQSADHRFHNTSHATXVMDTAGWKNMISSQPAP 581
           ++P QSAD +  NTS +   +   G +N+ SS   P
Sbjct: 127 KQPPQSADKQVENTSTSNPPVSVEGSENLASSVGGP 162


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = -1

Query: 507 EIYGLRFELVGGVQVCEYERVCGSLHRETQAQRLFAHHF*PLQCILIGRS*QIVGHLIQI 328
           E++ L+ ELV  + + +  R   S      +Q     H   L  + IGR+  +    +Q+
Sbjct: 43  EVFHLKDELVEQMNLLDSRRSTNSTRTIVDSQLEDCLHLLSLFYLAIGRNNDLPAFFVQL 102

Query: 327 GRSARIYE 304
           G   R+ E
Sbjct: 103 GTVRRLLE 110


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 421 SSTAPLRTSLLAAPMHTYRPQLADRRPSYPNWALCPY 311
           SS++PL+    +  + TY P L D +P Y    LC Y
Sbjct: 266 SSSSPLKKDSSSNSL-TYEPALTDHKPQY--LVLCVY 299


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +3

Query: 441 RRHAHTRRPALRRPAQSADHRFHNTSHATXVMDTAGWKNMI 563
           RRH        RR ++S     + T       D   WKN+I
Sbjct: 159 RRHDSELEEFARRASRSLSFSMNGTPQRRMTFDAEAWKNVI 199


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 489 SADHRFHNTSHATXVMDTAGWKNMISSQPAPHRG 590
           S+ H+F +      +++   W  M SS+P   RG
Sbjct: 303 SSIHKFKDEDDKKRILNGLKWLGMFSSKPVTPRG 336


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 427 RDSSTAPLRTSLLAAPMHTYRPQLADRR 344
           +D S+ PL++S+ ++  H Y   +A +R
Sbjct: 215 QDVSSVPLQSSVFSSGNHAYHASMAPKR 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,490
Number of Sequences: 5004
Number of extensions: 34439
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)