Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0763
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      34   0.001
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          30   0.015
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 112 LFDNERFSDVTLAVGGREFQAHKAILAA 195
           L D+E F DVTLA  GR  +AH+ +L+A
Sbjct: 25  LRDDEDFVDVTLACDGRSLKAHRVVLSA 52


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 43  ISGQSNVVQFKVPECRLSDDLGALFDNERFSDVTLAVGGREFQAHKAILAA 195
           ++GQ   +++   +  ++     L   E F DVTLA      +AHK +L+A
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSA 56


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 510 YEIYGLRFELVGGV 469
           YE++GL+F+   G+
Sbjct: 362 YELHGLKFQWTDGI 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,766
Number of Sequences: 438
Number of extensions: 2226
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)