Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0761
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    34   0.027
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    33   0.047
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    31   0.19 
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    30   0.33 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   5.4  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.4  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    26   5.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   7.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   9.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.4  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 15/38 (39%), Positives = 27/38 (71%)
 Frame = +2

Query: 14  LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRL 127
           L VL++SYN + ++ S+ F++ S+++HL +S N L  L
Sbjct: 832 LKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSGNELANL 869



 Score = 32.3 bits (70), Expect = 0.081
 Identities = 22/70 (31%), Positives = 39/70 (55%)
 Frame = +1

Query: 277 ETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHL 456
           +    + +LK LS  N  +  + S NLG + HL +LDL  N I ++    +  +  LK +
Sbjct: 700 DAISAMQNLKYLSCTNCEMSYV-SPNLGKLKHLVHLDLHANNI-KIFPEEVWQVSSLKVV 757

Query: 457 DLNNNIIESV 486
           +L++NI+E +
Sbjct: 758 NLSSNILEKI 767



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +1

Query: 310 LSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPF--LKELKHLDLNNNIIES 483
           L++ +N  LD+P   +   + L+ LD+S NL    S  G P   L++L+ L+++ N I  
Sbjct: 434 LNVSHNLSLDLPLDFMERCVKLKRLDISNNL---RSPRGKPITALRQLEVLNMSRNDIYE 490

Query: 484 VDSIRFS 504
           +D + FS
Sbjct: 491 LDPLIFS 497



 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 494 LGFHSCLHYVIWDLSDNNMTLIPTSALSKLSNLSHLYLSG 613
           L +  CL   + +LS N +T IP+      S+L HL++SG
Sbjct: 826 LEYFKCLK--VLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 11  QLTVLDISYNKILDLGSENFESNSEMRHLNLSNN 112
           +L  L++S+N  LDL  +  E   +++ L++SNN
Sbjct: 430 ELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN 463


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 16/71 (22%), Positives = 41/71 (57%)
 Frame = +1

Query: 286  EPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLN 465
            +P   ++ L L NN+ + +   ++   + + YL+L+   +++V ++    +  L+ LDL+
Sbjct: 842  QPSLDIRNLYLSNNTFVTLDCKHM--FLGVRYLELANVQLKEVPKYIATSMPNLRVLDLS 899

Query: 466  NNIIESVDSIR 498
            +N I  ++S++
Sbjct: 900  HNYISDIESLK 910



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/45 (33%), Positives = 31/45 (68%)
 Frame = +1

Query: 364 VIHLEYLDLSENLIQQVSRHGLPFLKELKHLDLNNNIIESVDSIR 498
           +++L+YLD+S N ++ ++  GL  L  L+ L +++N + S+D I+
Sbjct: 667 LLNLQYLDISYNQLEDLT--GLSSLIHLRELKVDSNHLWSLDGIQ 709



 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 14  LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLD 130
           L  LDISYN++ DL      S   +R L + +N L  LD
Sbjct: 670 LQYLDISYNQLEDL--TGLSSLIHLRELKVDSNHLWSLD 706


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 274 PETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLI 405
           PE+F  L +LK+LS+  N + ++P+  +  + +LE L +  N I
Sbjct: 114 PESFGALMNLKVLSISKNRLFELPT-YIAHMPNLEILKIENNHI 156


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +1

Query: 310 LSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQV-SRHGLPFLKELKHL 456
           L+L + S+ D+    +  +  L +LD+SEN I+ + S   L  L+ LKHL
Sbjct: 271 LNLSSTSLADVAELPVHTLHKLTFLDISENNIRDIRSLDHLRTLENLKHL 320


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 268 FEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRH 423
           ++P + +PL S K+     +S +D+ S  L  +  L  +  SEN++Q  + H
Sbjct: 314 YQPSSLQPLESRKL-----HSKVDVHSKKLNALSQLNPILRSENVLQNDNHH 360


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 778 SLTWTNPFIHIFWQIYIINESSRI 707
           ++TW N F+  FW I+  + S RI
Sbjct: 220 TVTWLNTFLQQFWYIFEPSLSERI 243


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 521 RNEGNYENLIESTLSIILLFKSKCFNSFKNGK 426
           RNE ++EN + +T S I    +   NS +NG+
Sbjct: 334 RNESSFENTLPNTPSAIQSLTTVSSNSSQNGR 365


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = -1

Query: 584 IVLKERTLELKSYYYH*GPK*RNEGNYENLIESTLSIILL------FKSKCFNSFKNGKP 423
           IV++   L++   YY        +  +EN  +STLS+  L       K    + +KNGK 
Sbjct: 11  IVVRREPLDVLLPYYDASETTVQKILHEN--DSTLSVKFLAGVEALIKKDELDKYKNGKA 68

Query: 422 CLETCCIKFSDRSKYSR*MTN 360
           CL    +K   R +Y   MT+
Sbjct: 69  CLRV-WLKHKSRKRYHGYMTS 88


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +1

Query: 403 IQQVSRHGLPFLKELKHLDLNNNIIESVDS----IRFS*LPSLRHLG 531
           I+ +   GL + +ELK LDL +N    + S    I     P+LR LG
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 769 WTNPFIHIFWQIYIINESSRIDSFEYVKSAQV*VFQEEKTL 647
           W+  F+    QIY+I  S+   S EY   AQ  V  +  TL
Sbjct: 81  WSIVFMFCLMQIYVIWTSNGFGSIEYSVMAQFNVSAQVATL 121


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 206 ARVCSIFHCLIDSNQPN 156
           A  C I++C + SN PN
Sbjct: 401 AHACGIYNCFLSSNAPN 417


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  SENFESNSEMRHLNLSNNFLKRLDKD 136
           SE F   S+ R LNL N FLK  D++
Sbjct: 268 SETFRPFSK-RELNLPNTFLKEFDQE 292


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 258  SMFEKSSLSKADKSLNVCTCMFDISL-FDRFKSTK 157
            S+ EK SL    +   V  CMFDISL F+ F + +
Sbjct: 1803 SLVEKYSLPFLRRVALVLYCMFDISLEFNEFSNNE 1837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,087
Number of Sequences: 5004
Number of extensions: 59799
Number of successful extensions: 192
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)