Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0761
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    44   1e-06
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.35 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 44.4 bits (100), Expect = 1e-06
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = +1

Query: 247 LKHRLVT-FEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRH 423
           L + ++T  +   F+ L  L+IL LRNNSI  I S     + +L  L+LS+N ++ V   
Sbjct: 342 LSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQ 401

Query: 424 GLPFLKELKHLDLNNNIIESVDSIRFS*LPSLRHL 528
               L  L  L L+ N I S+D + F     L+ L
Sbjct: 402 LFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKEL 436



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +2

Query: 14  LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFL--KRLDKDAFVGXXXXXXXXXXXXE 187
           L  + ++YN + DL    F    ++  LNL+ N L   R+D+  F+G             
Sbjct: 287 LREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNM 346

Query: 188 ISNIHVQTFRDLSALERLDFSN--IDWLLSN 274
           +++I  + F+DL  L+ LD  N  ID + SN
Sbjct: 347 LTHIDARMFKDLFFLQILDLRNNSIDRIESN 377



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 265  TFEPETFEPLSSLKILSLRNNSILDIPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKE 444
            + +  TF  L++L+IL L +N I ++       + HL  L L  NLI  +       L+ 
Sbjct: 832  SIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRS 891

Query: 445  LKHLDLNNN 471
            L+ L L+ N
Sbjct: 892  LEILRLSGN 900



 Score = 31.1 bits (67), Expect = 0.012
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 283 FEPLSSLKILSLRNNSILD--IPSANLGFVIHLEYLDLSENLIQQVSRHGLPFLKELKHL 456
           F  L  L +L+L  N +    +       +I L  L+LS N++  +       L  L+ L
Sbjct: 305 FTRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364

Query: 457 DLNNNIIESVDSIRFS*LPSLRHL 528
           DL NN I+ ++S  F  L +L  L
Sbjct: 365 DLRNNSIDRIESNAFLPLYNLHTL 388



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFL 118
           L +L +  N+I +L    FE  S +R L L NN +
Sbjct: 844 LQILHLEDNRIRELKGFEFERLSHLRELYLQNNLI 878



 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 14  LTVLDISYNKILDLGSENFESNSEMRHLNLSNNFLKRLD 130
           L +L+++ NK+  +    FE N  +  + L  NFL  ++
Sbjct: 504 LQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDIN 542



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +2

Query: 101 LSNNFLKRLDKDAFVGXXXXXXXXXXXXEISNIHVQTFRDLSALERL 241
           L  N L+ L    F+G             I +I  +TF  L+ L+ L
Sbjct: 801 LDGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQIL 847


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 53  LGSENFESNSEMRHLNLSNNFLKRLDKDAFV 145
           LGSEN+   S++   +  N+++ RL+  AFV
Sbjct: 108 LGSENYTGISDLFVFDDLNDYINRLNYSAFV 138


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 769 WTNPFIHIFWQIY 731
           W N  +HI W  Y
Sbjct: 96  WNNQILHILWTSY 108


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 769 WTNPFIHIFWQIY 731
           W N  +HI W  Y
Sbjct: 79  WNNQILHILWTSY 91


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 FQLYYYSSPNVSILLRTVSRVW 416
           FQL+ Y SP  S   +  SR+W
Sbjct: 616 FQLFLYVSPVSSEYNQYNSRIW 637


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 481 FQLYYYSSPNVSILLRTVSRVW 416
           FQL+ Y SP  S   +  SR+W
Sbjct: 616 FQLFLYVSPVSSEYNQYNSRIW 637


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 409 AVSNSLTDLNIQGE*RIQDWQMVYLIWN 326
           AV   LTDL   GE    DW    ++ N
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKDIMLLN 349


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 409 AVSNSLTDLNIQGE*RIQDWQMVYLIWN 326
           AV   LTDL   GE    DW    ++ N
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKDIMLLN 349


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 409 AVSNSLTDLNIQGE*RIQDWQMVYLIWN 326
           AV   LTDL   GE    DW    ++ N
Sbjct: 322 AVQKELTDLGKLGEEEKADWWKDIMLLN 349


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 318 QKQFHIRYTICQSWIRHSP*IFRSVR 395
           QKQ H    I ++WI H   +  S+R
Sbjct: 790 QKQSHTPNGIVKTWIAHDRYLPNSLR 815


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,403
Number of Sequences: 438
Number of extensions: 4260
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)