Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0759
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    27   2.5  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    25   5.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.5  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 3   KIYRSQLKSKFNVTHSRIGELLILNNVDIITVYYNMYNVNS 125
           K +R  + +K+N    R  + +I+ NV+ +  Y N + V +
Sbjct: 574 KCFREAVDAKWNFRRQRERQEIIIQNVEKLKSYLNSFKVQA 614



 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 228 LLIKVNSNSYSVLNIYT*HNDLINIYVC 145
           +L K+ SN Y  +++Y+ H D+ ++  C
Sbjct: 548 MLKKLGSNDYFNISMYSNHTDIHSLLKC 575


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 51  RIGELLILNNVDIITVYYNMYNVNSL*NYMYY 146
           ++ +++I NN D+ T+Y N++NV  L    Y+
Sbjct: 171 QLADIVIENNSDLETLYENIHNVLPLITPSYF 202


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 228 LLIKVNSNSYSVLNIYT*HNDLINIYVCNTYNFINYLHCTYYN 100
           +++K   NS    NI     +  N+Y  ++  F N LHC Y+N
Sbjct: 298 IMVKDLENSLLQSNIRNVGYEKKNLYYISSA-FSNLLHCRYFN 339


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 332  NIISLCLKAVFD-LWQYKKGPSIDIVISFD*LILMRSKFFFLLFYLHSMAFVCYKD 496
            N++    + +F+ LW   +    D+       +++R++   + F ++   FVC+KD
Sbjct: 1283 NVLQSSAEVMFENLWHILQIRETDVPGILHAWVIIRNRLTSIRFIVNRKFFVCFKD 1338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,437
Number of Sequences: 5004
Number of extensions: 30459
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)