Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0759
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    27   0.097
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.69 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   3.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   3.7  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 0.097
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 144 NTYNFINYLHCTYYNKQL*YQHYL 73
           N Y + NY +   YNK+L Y++Y+
Sbjct: 87  NNYKYSNYNNYNNYNKKLYYKNYI 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 171 NDLINIYVCNTYN-FINYLHCTY--YNKQL*YQHYL 73
           + L N Y  + YN + NY +  Y  YNK+L Y++Y+
Sbjct: 316 SSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 137 YVLHTYILIKSLC 175
           Y  HTYI+ +SLC
Sbjct: 39  YFHHTYIIYESLC 51


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 137 YVLHTYILIKSLC 175
           Y  HTYI+ +SLC
Sbjct: 39  YFHHTYIIYESLC 51


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 159 NIYVCNTYNFINYLHCTYYN 100
           N Y  N YN  NY    YYN
Sbjct: 95  NNYNNNNYNNNNYKKLQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 159 NIYVCNTYNFINYLHCTYYN 100
           N Y  N YN  NY    YYN
Sbjct: 95  NNYNNNNYNNNNYKKLQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 159 NIYVCNTYNFINYLHCTYYN 100
           N Y  N YN  NY    YYN
Sbjct: 95  NNYNNNNYNNNNYKKLQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 159 NIYVCNTYNFINYLHCTYYN 100
           N Y  N YN  NY    YYN
Sbjct: 95  NNYNNNNYNNNNYKKLQYYN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,923
Number of Sequences: 438
Number of extensions: 2276
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)