Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0758
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.81 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   4.3  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   7.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.9  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.9  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   9.9  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 245  SRVCFGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILI 108
            S VCFG  L +F    F++W  G  + C+      + S  +F I I
Sbjct: 1186 SLVCFGVALFVFKFGDFVSW-TGRNIECIEDIGLFISSPTIFVINI 1230


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 58  PKVTAITKNETVENKSPIKIANKASEGTNLLKHLKHITAKPINQ 189
           P +T I++   + NK+      K SE T LL H   +  +P++Q
Sbjct: 447 PNLTNISR--VLSNKTSKSAKPKRSERTGLLSHQSTLAPEPLSQ 488


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 390 DALKHLNKTVTVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSILN 539
           D     +KT  +   K  +PS K  +     P EPP   I+ K  + ILN
Sbjct: 380 DTTTSTSKTGPLFGNKPADPSAKPGATASTTPSEPPPSSIKHKTLQEILN 429


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 480 LPEEPPNVVIRKKETKSI 533
           L +EPPN+V +KKE   I
Sbjct: 171 LNKEPPNIVFKKKERGGI 188


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 43  TNIQSPKVTAITKNETVENKSPIK 114
           T+I+SP+ T++ K    E K+P++
Sbjct: 894 THIESPQGTSLEKENEEEGKNPVE 917


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 432 LKSTEPSPKVHSGDFILPEEP-----PNVVIRKKETKSILN 539
           L+      +++ GD IL + P     P +++R+KETK  LN
Sbjct: 41  LEQASADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLN 81


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 507 IRKKETKSILNWKP*EYTEEFRK*YNSQIXEHIS 608
           + + E  S+L+W    YT +F K  +S+   HI+
Sbjct: 106 MEEDEVVSLLSWDSFFYTRDFPKFQSSRTARHIT 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,984
Number of Sequences: 5004
Number of extensions: 41083
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)