Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0758
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680...    30   1.9  
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497...    29   3.4  
03_05_0225 + 22111269-22111327,22111587-22111638,22112148-221121...    29   3.4  
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388...    29   4.5  
03_05_0531 - 25317446-25317762,25318000-25318160,25318239-253183...    28   5.9  

>02_03_0172 +
           15965342-15965711,15967757-15967849,15967976-15968060,
           15968749-15968824,15968992-15969120,15969473-15969571,
           15969661-15969762,15970257-15970415,15970507-15970602,
           15971497-15971647,15971782-15971893,15972004-15972074,
           15972548-15972984,15973421-15973492,15973713-15973810,
           15974350-15974425,15975512-15975634,15975776-15975844
          Length = 805

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 384 SIDALKHLNKTVTVKPLKSTEPSPKVHSGDFILPEEPPNVV 506
           S++   HL KTVT  PLK  +     ++GD    + P  V+
Sbjct: 664 SVEMTSHLRKTVTFLPLKVNKERNVTNNGDGQTVDNPETVI 704


>04_04_0924 -
           29449285-29449290,29449386-29449575,29449669-29449772,
           29449845-29449976,29450064-29450162,29450439-29450451,
           29450688-29450719,29450802-29450921,29450992-29451105,
           29451192-29451325,29454014-29454251
          Length = 393

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +3

Query: 255 KMKKTNIKVERNEDNIEVFNIDDSDSDXXXXXXXXXXXXMDQ--KSIDALKHLNKTVTVK 428
           K  K NI  E N DN    + D+ D D             DQ  +  D L HL K   +K
Sbjct: 85  KRSKVNISSESNSDNDCSLSSDNHDGDVHLSNHDESSDNHDQHFEENDPLLHLTKEEHMK 144

Query: 429 PLK 437
            LK
Sbjct: 145 KLK 147


>03_05_0225 +
           22111269-22111327,22111587-22111638,22112148-22112151,
           22112981-22113114,22113201-22113314,22113386-22113505,
           22113587-22113618,22113854-22113866,22114144-22114242,
           22114388-22114464,22114733-22114922,22115020-22115025
          Length = 299

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +3

Query: 255 KMKKTNIKVERNEDNIEVFNIDDSDSDXXXXXXXXXXXXMDQ--KSIDALKHLNKTVTVK 428
           K  K +I  E N DN    + D+ DSD             DQ  +  D L HL K   +K
Sbjct: 44  KRSKVDISSESNSDNDCSLSSDNHDSDVHLSNHDESSDNHDQHFEENDPLLHLTKEELMK 103

Query: 429 PLK 437
            LK
Sbjct: 104 KLK 106


>01_06_0572 -
           30337572-30338107,30338209-30338422,30338505-30338862,
           30338948-30339048,30339185-30339749,30340553-30340664,
           30341196-30341372,30341589-30341686,30341859-30341953,
           30342078-30342158
          Length = 778

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 405 LNKTVTVKPLKSTEPSPKVHSGDFILPEEPPNV 503
           + +TVT   L   +P P V++ D ++P  P NV
Sbjct: 376 MGQTVTPYQLPGNKPYPLVYAADAVVPGTPANV 408


>03_05_0531 -
           25317446-25317762,25318000-25318160,25318239-25318336,
           25318462-25318623,25319707-25319799,25319909-25319971,
           25320549-25320694,25320804-25320961,25321033-25321225,
           25321865-25322093
          Length = 539

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 209 GIVPFITWFIGFAVMCLRCFSRLVPSLALFAI 114
           GI  F+ W +    +C    S L P LALFA+
Sbjct: 329 GIAQFVKWAMRVVAICFVMQSTLDPLLALFAL 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,470,042
Number of Sequences: 37544
Number of extensions: 232086
Number of successful extensions: 528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)