Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0758
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       32   0.37 
SB_28304| Best HMM Match : zf-C2H2 (HMM E-Value=2.8026e-45)            31   0.84 
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_53818| Best HMM Match : WRKY (HMM E-Value=4.4)                      28   6.0  

>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 1   EAGEEQFRKKILNFTNIQSPKVTAITKNETVENKSPIKIANKASEGTNLL 150
           E GE+Q  K  L FT+ Q+PKV  +  N  +  K   +I +KA   T  L
Sbjct: 776 EVGEDQIVKLTLTFTSEQAPKVEWLKNN--IRVKESYRIKSKADNDTATL 823


>SB_28304| Best HMM Match : zf-C2H2 (HMM E-Value=2.8026e-45)
          Length = 243

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 4   AGEEQFRKKILNFTNIQSPKVTAITKNETVENKSPIKIANKA-SEGTNLLKHLK-HITAK 177
           +GE+ FR ++      QS  VT   +    E     K+ NKA ++ + L KH++ H   K
Sbjct: 157 SGEKPFRCRVCGRQFSQSSSVTTHMRTHNGERPYKCKVCNKAFADSSTLTKHVRTHTGEK 216

Query: 178 P 180
           P
Sbjct: 217 P 217


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 420  TVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSILN 539
            TV+ LK  +   K+HSGD  +P EP N V     +KS  N
Sbjct: 1019 TVQDLKK-KSKDKLHSGDIDIPSEPVNSVKENLTSKSYKN 1057


>SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 82  NETVENKSP-IKIANKASEGTNLLKHLKHITAKPINQVIKGTIPKI 216
           NE+ E++S  IK+ N+   G N  +      +KP+N ++ G+ P +
Sbjct: 10  NESFEDRSGYIKVYNQGYSGMNTARSALSCISKPVNGILFGSHPTV 55


>SB_53818| Best HMM Match : WRKY (HMM E-Value=4.4)
          Length = 122

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 197 FITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSFFVIAVT 63
           F+T FI FA++ +     +V    +FA+++  L  T++  V+ ++
Sbjct: 4   FVTIFIIFAIVTIFIIFAIVTIFIIFAVIVVILIITITVVVVIIS 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,818,818
Number of Sequences: 59808
Number of extensions: 286192
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)