Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0758
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 31 0.75
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 31 0.75
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 29 3.0
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 29 3.0
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 9.2
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
protein C09D8.1a protein.
Length = 2180
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 381 KSIDALKHLNKT-----VTVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSI-LNW 542
K++ L H+ T V V L + E + V + + LP P N+V+ ++S+ + W
Sbjct: 302 KNVLTLTHVESTENFTCVAVSALGNIEATTTVIAKE--LPPPPVNIVVSSVTSESVVITW 359
Query: 543 KP*EYTEEFRK*YNSQIXEHISQSTSSGG 629
KP +Y E K Y S+ SS G
Sbjct: 360 KPPKYNEAINK-YVVNYRLKYSEGRSSRG 387
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
protein C09D8.1a protein.
Length = 2180
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 381 KSIDALKHLNKT-----VTVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSI-LNW 542
K++ L H+ T V V L + E + V + + LP P N+V+ ++S+ + W
Sbjct: 302 KNVLTLTHVESTENFTCVAVSALGNIEATTTVIAKE--LPPPPVNIVVSSVTSESVVITW 359
Query: 543 KP*EYTEEFRK*YNSQIXEHISQSTSSGG 629
KP +Y E K Y S+ SS G
Sbjct: 360 KPPKYNEAINK-YVVNYRLKYSEGRSSRG 387
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 31.1 bits (67), Expect = 0.75
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 381 KSIDALKHLNKT-----VTVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSI-LNW 542
K++ L H+ T V V L + E + V + + LP P N+V+ ++S+ + W
Sbjct: 302 KNVLTLTHVESTENFTCVAVSALGNIEATTTVIAKE--LPPPPVNIVVSSVTSESVVITW 359
Query: 543 KP*EYTEEFRK*YNSQIXEHISQSTSSGG 629
KP +Y E K Y S+ SS G
Sbjct: 360 KPPKYNEAINK-YVVNYRLKYSEGRSSRG 387
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 233 FGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSF--FVIAVTL 60
FG + F V F + +GF + C+ F + ++ A+L LF +S+ F++A
Sbjct: 291 FGSAIAGFAGVFFGSLMLGFMIGCMNAFLTKMTLISEHALLESSLFVLISYISFLVAEVC 350
Query: 59 G 57
G
Sbjct: 351 G 351
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 233 FGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSF--FVIAVTL 60
FG + F V F + +GF + C+ F + ++ A+L LF +S+ F++A
Sbjct: 291 FGSAIAGFAGVFFGSLMLGFMIGCMNAFLTKMTLISEHALLESSLFVLISYISFLVAEVC 350
Query: 59 G 57
G
Sbjct: 351 G 351
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 233 FGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSF--FVIAVTL 60
FG + F V F + +GF + C+ F + ++ A+L LF +S+ F++A
Sbjct: 291 FGSAIAGFAGVFFGSLMLGFMIGCMNAFLTKMTLISEHALLESSLFVLISYISFLVAEVC 350
Query: 59 G 57
G
Sbjct: 351 G 351
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 233 FGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSF--FVIAVTL 60
FG + F V F + +GF + C+ F + ++ A+L LF +S+ F++A
Sbjct: 291 FGSAIAGFAGVFFGSLMLGFMIGCMNAFLTKMTLISEHALLESSLFVLISYISFLVAEVC 350
Query: 59 G 57
G
Sbjct: 351 G 351
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 381 KSIDALKHLNKTVTVKPLKSTEPSPKVHSGDFILPEEPPNVVIRKKETKSILNWKP 548
+ + ALK + +VKP+ P+ KV PE PP + K TK WKP
Sbjct: 234 RKVPALKKKEPSTSVKPVSDPSPTKKVPVKK--EPEVPPTPI--KNPTK---KWKP 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,474
Number of Sequences: 27780
Number of extensions: 225027
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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