Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0758
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi... 33 0.23
At2g29900.1 68415.m03631 presenilin family protein similar to pr... 30 1.6
At1g08700.1 68414.m00966 presenilin family protein similar to SP... 29 2.8
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 28 4.9
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi... 28 4.9
At1g51500.1 68414.m05796 ABC transporter family protein similar ... 28 6.5
At2g45870.1 68415.m05705 expressed protein contains Pfam profile... 27 8.6
At1g06100.1 68414.m00639 fatty acid desaturase family protein si... 27 8.6
At1g05270.1 68414.m00533 TraB family protein contains Pfam domai... 27 8.6
>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
Length = 1169
Score = 32.7 bits (71), Expect = 0.23
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 EAGEEQFRKKILNFTNIQSPKVTAITKNETVENKSPIKIANKASEGTNLLKHLKHITAKP 180
++ QF KIL F + A +K+ T+++K P+ N A + +++LK + P
Sbjct: 1081 DSSNVQFLSKILFFADHLEVTNEAASKDSTLKHKEPLAETNAAVDKSDVLKSIDRFAYSP 1140
Query: 181 INQVIKG--TIPKIVNRSPKHTL 243
Q G K R PK L
Sbjct: 1141 NQQQESGGWRTTKSKLRLPKRNL 1163
>At2g29900.1 68415.m03631 presenilin family protein similar to
presenilin [Drosophila melanogaster] GI:2062395;
contains Pfam profile PF01080: Presenilin
Length = 397
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = -3
Query: 254 LLISRVCFGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLFSTVSFFV 75
+L+ R DL+T++ I +G +M L + + +P+L + +I++G +F ++ +
Sbjct: 324 VLVGRAAMYDLMTVYACYLAIIAGLGITLMLLSVYQKALPALPV-SIMLGVVFYFLARLL 382
Query: 74 IAV 66
+ V
Sbjct: 383 LEV 385
>At1g08700.1 68414.m00966 presenilin family protein similar to
SP|P52166 Presenilin sel-12 {Caenorhabditis elegans};
contains Pfam profile PF01080: Presenilin
Length = 453
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/53 (26%), Positives = 31/53 (58%)
Frame = -3
Query: 254 LLISRVCFGDLLTIFGIVPFITWFIGFAVMCLRCFSRLVPSLALFAILIGDLF 96
+L+ R DL+T++ I +G ++ L ++R +P+L + +I++G +F
Sbjct: 380 VLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVYNRALPALPI-SIMLGVVF 431
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 438 STEPSPKVHSGDFILPEEPPNVVIRKKETKSILNWKP*EYTEEF 569
S+ PSP + G ILP E + +++ + + ++ KP + + F
Sbjct: 77 SSCPSPSIKEGRLILPRESIEISVKRLKAQEDISRKPTQNLKRF 120
>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 630
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 KASEGTNLLKHLKHITAKPINQVIKGTI-PKIVNRSPKHTLDI 249
K E TN+ +HL I KP ++ + ++NR PK L +
Sbjct: 520 KTFEATNVFEHLVSIGVKPDSRTYSLLVDAHLINRDPKSALTV 562
>At1g51500.1 68414.m05796 ABC transporter family protein similar to
GB:AAF61569 from [Bombyx mori]
Length = 687
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 228 RSINYFWNRALYYLVYWFC 172
R I Y+W+R + Y+V FC
Sbjct: 376 RDIGYYWSRIVIYIVVSFC 394
>At2g45870.1 68415.m05705 expressed protein contains Pfam profile
PF05249: Uncharacterised protein family (UPF0187)
Length = 410
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 148 LKHLKHITAKPINQVIKGTIPKI 216
L+HL+H+++ P ++VI IP +
Sbjct: 97 LRHLRHVSSSPSSRVILSLIPPV 119
>At1g06100.1 68414.m00639 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 299
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 254 LLISRVCFGDLLTIFGIVPFITWFIGF 174
L++ + F L+ ++G +P++TW +GF
Sbjct: 174 LVLHILAFWTLIYLWGGLPYLTWTVGF 200
>At1g05270.1 68414.m00533 TraB family protein contains Pfam domain
PF01963: TraB family
Length = 371
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 417 VTVKPLKSTEPSPKVHSG-DFILPEEP 494
+T++P +S P+VHSG DF+ ++P
Sbjct: 1 MTIEPTQSPSSEPEVHSGEDFVHIDDP 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,126
Number of Sequences: 28952
Number of extensions: 204102
Number of successful extensions: 527
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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