Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0755
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    90   4e-19
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.1  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   5.4  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   9.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 39/67 (58%), Positives = 54/67 (80%)
 Frame = +1

Query: 508 ENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIPXXEDFVQSVD 687
           E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS++ L E++   ED+VQS D
Sbjct: 148 EKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTD 207

Query: 688 IAAFNQI 708
           IAA +++
Sbjct: 208 IAAMSKL 214



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
 Frame = +3

Query: 45  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQI 221
           M   D+ +  GL  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 222 ASY 230
           A+Y
Sbjct: 61  ATY 63



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +2

Query: 410 YADKKSKKPALIAKSSILLDVKPWDDETDMKEMK 511
           Y  KK+ KP  + KS + LDVKPWDDET M E++
Sbjct: 115 YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELE 148


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 675 YKIFXXWNFFCQQINRNFVVLDDTHNLQFIYAIPN 571
           Y+    W +  Q +N   VV +D  + +F + +PN
Sbjct: 39  YRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPN 73


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 78   LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 236
            L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4648 LDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 732 NITC*GCLDLVKCSNVNRLYKIFXXWNFFCQQINRNFVVLDDTHNLQFIYAI 577
           NITC   LD++   N N +Y            I ++   L D H   FIY I
Sbjct: 82  NITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 119
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,361
Number of Sequences: 5004
Number of extensions: 54887
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)