Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0755
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               50   3e-06
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 49   4e-06
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.7  
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 28   7.5  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +1

Query: 508 ENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIPXXEDFVQSVD 687
           E  VR+I+ +GLLWGASKLVP+ YGI KLQI  V+EDDK+S D L E+I   EDFVQSVD
Sbjct: 159 EKLVRSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVD 218

Query: 688 IAAFNQI 708
           IAAFN+I
Sbjct: 219 IAAFNKI 225



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 36/62 (58%), Positives = 44/62 (70%)
 Frame = +3

Query: 45  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 224
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 225 SY 230
           SY
Sbjct: 61  SY 62



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +2

Query: 401 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMK 511
           LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EM+
Sbjct: 123 LKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEME 159


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +3

Query: 126 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 230
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +1

Query: 556 SKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIPXXEDF 672
           +KLV + YG+ KLQI CVIED KVS D L +K+   EDF
Sbjct: 116 TKLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = +1

Query: 559 KLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIPXXEDF 672
           KLV + YG+ KLQI CVIED KVS D L +K+   EDF
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 173
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 401 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMKTKY 520
           LK  AD   KKP  +    ++ D  P D+E + KE  T +
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKEDFTSF 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,121
Number of Sequences: 59808
Number of extensions: 409300
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)