Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0754
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.72 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.7  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   2.2  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    27   3.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   5.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   5.0  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   6.7  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.7  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.8  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 728  STFLSDSVLSTAAGTVTISIFGSLSIFVLTSDGASSSFISAVLFVPVLK--SDGVADSNC 555
            S  L+ S+LS++ G  + +     S F LTS+  S S  S V   PVL   S+   DS+ 
Sbjct: 3507 SVSLNSSLLSSSGGFSSSAFSTGSSSFSLTSENGSVSSSSLVSSSPVLSGYSESSFDSSV 3566

Query: 554  F 552
            F
Sbjct: 3567 F 3567


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +1

Query: 559  LESATPSDFKTGTNKTAEIKLEEAPSEVKTKIDSEPKMEIVTVPAAVDKTESDRKVETPL 738
            +E A  ++     N + E K  EAPS  +T    EP+ +     A V+K ++++ V+ P+
Sbjct: 955  VEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQ---KKAPVEKKDAEKSVQAPI 1011


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +2

Query: 296 YQRARNCASPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDA 475
           YQ          E+  +++  V+ S+ NSE ++     + + +E+ +  NSE    SSD 
Sbjct: 104 YQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSE----SSDE 159

Query: 476 HISVDDVETRL*LKEI 523
               +D ET+  L+E+
Sbjct: 160 ESDSED-ETQQLLREL 174


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 526 PMEVQDN-NAKQLESATPSD-FKTGTNKTAEIKLEEAPSEVKTKIDSEPKMEIVTVPAAV 699
           P  + D  N  + E+ T  D FKT      E+ L  A + + TKI S  K+     PA V
Sbjct: 114 PSLISDGFNLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISS--KVVESLAPAVV 171

Query: 700 DKTESDRKVETPL 738
           D   + R+ + P+
Sbjct: 172 DAILTIRRPDEPI 184


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 320 SPEPENGDNAEHLVNGSDNNSEYNVDVEMED 412
           SPE E  + +  + N    NS+YN  ++MED
Sbjct: 190 SPEVEKIETSTSVENAYITNSQYNDTLDMED 220


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 707 VLSTAAGTVTISIFGSLSIFVLTSDGASSS 618
           V+  AAGTVT +++    ++  T   AS S
Sbjct: 752 VIEPAAGTVTTTVYSGSEVYTTTLASASES 781



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 707 VLSTAAGTVTISIFGSLSIFVLTSDGASSS 618
           V+  AAGTVT +++    ++  T   AS S
Sbjct: 824 VVEPAAGTVTTTVYSGSEVYTTTLASASES 853


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +1

Query: 523 TPMEVQDNNAKQLESATPSDFKTGTNKTAEIKLEEAPSEVKTKIDSE----PKMEIVTVP 690
           TPME +      +E+      +  T  T E+      S ++T    E    P +E  T+P
Sbjct: 208 TPME-ETTTTPMVETMITPMVEAMTTPT-EVVGRSMVSTIRTTTPMEAMITPTVETTTLP 265

Query: 691 AAVDKTESDRKVETPLISTLV 753
            A   T  +    TP++ T++
Sbjct: 266 TAAMTTPVEETTTTPMVETMI 286


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 368 SDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDD 493
           S N+SE   D+    V+ +E +E   + PQ  S    +++DD
Sbjct: 86  SKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSLPLNLDD 127


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 574 PSDFKTGTNKTAEIKLEEAPSEVKTKIDSEPKM-EIVTVPAAVDKTESDRKVETPLISTL 750
           P  F  G+N ++      A S V T+  SE  + ++  VP+  + T S   +E+PL STL
Sbjct: 426 PPSFSLGSNPSSG-----AASAVITRNPSETSLADLSRVPSYKEATRSAVPLESPLQSTL 480


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 367 AVNEMFRIVAIFWFW--*RTIPGSL-VLTTKMFFSIALINFQRGCIAYED 227
           A++ +F ++AIFW W   RTI     +    + F  +++     C+A  D
Sbjct: 39  AISIVFSLIAIFWRWSRRRTIREQFHIALFSVLFIRSIVQMIHPCLALSD 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,553
Number of Sequences: 5004
Number of extensions: 72321
Number of successful extensions: 263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)