Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0752
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    27   2.6  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   7.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.9  

>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 410 FDPPHLLK----GVRNNLLIKDALFVQDGVMKRAKW 505
           + P H+LK    G    LLI D+LF    +  R KW
Sbjct: 294 YGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKW 329


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 186 IDQPQLLSGIVPPSSMNNMIKLEVYHTEL 272
           + QP+ +      SS N  +KLE YH  +
Sbjct: 76  VKQPKAIVAAKTASSFNPNVKLEAYHANI 104


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 206  QQLWLINFDVSCII*SVIKASEIAFHFRS 120
            Q+LW +N     ++       EI  H+RS
Sbjct: 1351 QELWALNIQADIVLRGASSLEEIVTHYRS 1379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,116
Number of Sequences: 5004
Number of extensions: 55455
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)