Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0752
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 famil...    29   2.2  
At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 famil...    29   2.2  
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil...    29   2.2  
At3g28340.1 68416.m03540 galactinol synthase, putative                 29   3.9  
At3g06260.1 68416.m00719 galactinol synthase, putative contains ...    28   5.2  
At1g70090.1 68414.m08064 glycosyl transferase family 8 protein c...    27   9.0  
At1g19300.1 68414.m02400 glycosyl transferase family 8 protein c...    27   9.0  

>At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 315

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 IDQPQLLSG---IVPPSSMNNMIKLEVYHTELFAIK 284
           ID+PQ+ SG   I+PPS+++ +  L++ +  LF ++
Sbjct: 25  IDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60


>At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 311

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 IDQPQLLSG---IVPPSSMNNMIKLEVYHTELFAIK 284
           ID+PQ+ SG   I+PPS+++ +  L++ +  LF ++
Sbjct: 25  IDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60


>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
           protein similar to SP|P70362 Ubiquitin fusion
           degradation protein 1 homolog (UB fusion protein 1) {Mus
           musculus}; contains Pfam profile PF03152: Ubiquitin
           fusion degradation protein UFD1
          Length = 319

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 IDQPQLLSG---IVPPSSMNNMIKLEVYHTELFAIK 284
           ID+PQL SG   I+PPS+++ +  L + +  LF ++
Sbjct: 25  IDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60


>At3g28340.1 68416.m03540 galactinol synthase, putative 
          Length = 365

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 637 EYCAANFTFHFWXLFFNNHVLPSVY 563
           EYC ANFT +F   F+++  L SV+
Sbjct: 204 EYCHANFTKYFTDSFWSDQKLSSVF 228


>At3g06260.1 68416.m00719 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 351

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 637 EYCAANFTFHFWXLFFNNHVLPSV 566
           EYC ANFT +F   F+++ VL  V
Sbjct: 198 EYCHANFTHYFTRTFWSDPVLVKV 221


>At1g70090.1 68414.m08064 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 390

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 637 EYCAANFTFHFWXLFFNNHVLPSVY 563
           EYC ANFT +F   F+++  LP  +
Sbjct: 218 EYCHANFTKYFTSGFWSDPALPGFF 242


>At1g19300.1 68414.m02400 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 351

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 637 EYCAANFTFHFWXLFFNNHVL 575
           EYC ANFT +F   F++N  L
Sbjct: 199 EYCNANFTSYFTSTFWSNPTL 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,697
Number of Sequences: 28952
Number of extensions: 276902
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)