Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0751
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   101   7e-23
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   101   7e-23
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.33 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.8  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   4.1  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    25   7.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   9.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.5  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    25   9.5  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  101 bits (242), Expect = 7e-23
 Identities = 45/65 (69%), Positives = 55/65 (84%)
 Frame = +3

Query: 69  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 248
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 249 RILML 263
           RI+ +
Sbjct: 77  RIIQV 81



 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 193
           MGI+RD  HKR ATG +   + ++ +  +       +  P   + +R      K+     
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 194 ASGHR*LLLGIGMFNSQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 373
            SG+     G    + +   + V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 61  DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 374 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALES 511
           + +G  KG K T          +S+   RK+ AR   +KV+ ALE+
Sbjct: 119 ILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALET 158


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  101 bits (242), Expect = 7e-23
 Identities = 45/65 (69%), Positives = 55/65 (84%)
 Frame = +3

Query: 69  KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 248
           KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KT
Sbjct: 17  KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76

Query: 249 RILML 263
           RI+ +
Sbjct: 77  RIIQV 81



 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSA-NPLRSFTW-WKY*VPCA 193
           MGI+RD  HKR ATG +   + ++ +  +       +  P   + +R      K+     
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRL 60

Query: 194 ASGHR*LLLGIGMFNSQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 373
            SG+     G    + +   + V Y+ SNNELVRT TL K+AIV +DA PFR WYE+HY 
Sbjct: 61  DSGN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118

Query: 374 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALES 511
           + +G  KG K T          +S+   RK+ AR   +KV+ ALE+
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALET 158


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 48  SEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 197
           S+G    K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 35  SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 215  LLGIGMFNSQNPYLDVVYNASNNE 286
            L+ I   N +NPY D++ N S N+
Sbjct: 2386 LIFISQHNGKNPYYDLIVNISENK 2409


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 102  ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 254
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 357 YHCLNGVASTTTIAFLTRVFVRTNS 283
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 335 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIE 811


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 301 DPCQECNCCSRCNSIQAVV 357
           D C++   CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 85   RMGARFPAGGPSLMPVIPTNTHLSWVK 5
            RM   F      L+PVI T THLS V+
Sbjct: 1196 RMSVDFSEKYTQLIPVITTYTHLSEVE 1222


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 315 FLTRVFVRTNSLLDALYTTSRYGFCELNIPI 223
           F+T+ F R+  L D+L   S Y F + +IP+
Sbjct: 629 FITK-FSRSKGLFDSLCYVSIYAFNDYSIPL 658


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 288 NSLLDALYTTSRYGFCELNIPIPKRSYRCPDAAHGT*YFHHVNERSGF 145
           + L+  LY   +  +  L+I   K +Y      HG   F H+++++ F
Sbjct: 52  DGLITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQKTVF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,518
Number of Sequences: 5004
Number of extensions: 43070
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)