Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0751
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              118   2e-27
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           38   0.007
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           31   0.80 
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.4  
SB_55494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)                  27   7.4  
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    27   7.4  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   27   9.8  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)                      27   9.8  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  118 bits (285), Expect = 2e-27
 Identities = 56/85 (65%), Positives = 66/85 (77%)
 Frame = +2

Query: 254 LDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIIN 433
           +DVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+N
Sbjct: 63  IDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILN 122

Query: 434 KKRSQKTARKYLARQRLAKVEGALE 508
           KKRS    RK  AR+  AKV   +E
Sbjct: 123 KKRSNHCTRKLEARKANAKVAPGME 147



 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 42/60 (70%), Positives = 50/60 (83%)
 Frame = +3

Query: 78  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIL 257
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RI+
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 248 PYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 367
           P L V+++ +N E +    +VK +IV VD  PF  W++ +
Sbjct: 74  PILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 138 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRILMLCIMHLTMN 287
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I  L +MH   N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI--LSVMHSFAN 84


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
 Frame = -3

Query: 366 CDSYHCLNGVASTTTIAFLTRVFVRTNSLL--DALYTTSRYGFCELNIPIPKRSYRCPDA 193
           C  Y C   V +TT +A +  ++++  S +   A+     + +C  N             
Sbjct: 700 CPGYKCATPVDNTTILALVPELYLKYTSQVRQKAVEANPSWRWCPGNKCSLVNKVTKRSC 759

Query: 192 AHGT*YFHHVNERSGFAEGRAWCLQRDALTHTSSSC 85
            HG  +  +       A G+ WC +    TH  + C
Sbjct: 760 YHGNTFLDYGGVPVACACGKTWCSECQEETHWPAKC 795


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 392 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALES 511
           + AKL + EE II K+ +  TA   +  ++  K++ ALE+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEA 740


>SB_55494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 294 RTNSLLDALYTTSRYGFCELNIPIPKRSYRCPDAAH-GT*YFHHVNERSGFAEGRAWCLQ 118
           R   L +A+Y +S +GF E+ + +  RS   P + H  T   +H  E+   A  R  CL 
Sbjct: 330 RMKVLQEAMYHSSEHGFVEIAMEL--RSLGVPWSLHCWTQTLYHAYEQGQTAHAR--CLF 385

Query: 117 RD 112
           RD
Sbjct: 386 RD 387


>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
          Length = 824

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 125 VCSGTP*LILPLLAYGRTFPSRWPF 51
           + SG     +PL +YGRT   RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 115 PLQTPGSALSESTPFVHVVEILSTVRCVWTPVTSLGDRNVQL 240
           P ++P   L  +TP VHVV +    R V   +TS+  +N+++
Sbjct: 632 PRRSPLLQLLSNTPDVHVVVVELFQRHVHAVLTSMAKKNIKI 673


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 490 LSKTLPCQVFSCCLLTSLLVD 428
           + K+LP  + SC LLTSL++D
Sbjct: 523 IGKSLPLLINSCTLLTSLVLD 543


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 434 KKRSQKTARKYLARQRLAKVEGALESI 514
           K+R QK  + Y  RQR  ++  +LE +
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEEL 41


>SB_8284| Best HMM Match : C1_3 (HMM E-Value=0.38)
          Length = 523

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 366 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSRYGFCELNIPIPKRSYR 205
           CD   C NG++ ++ I  + +   R +S++  +  T     C ++  I KR Y+
Sbjct: 470 CDKKGCTNGLSCSSVIKRVVQTGCRVDSVIKKVVQTG----CRVDSVIKKRLYK 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,958
Number of Sequences: 59808
Number of extensions: 358539
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)