SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0751
         (539 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   147   2e-35
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   147   2e-35
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   147   2e-35
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   147   2e-35
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...   139   7e-33
BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal pr...    38   0.017
AB016767-1|BAA74724.1|  523|Homo sapiens telomerase transcriptas...    31   2.0  

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  147 bits (356), Expect = 2e-35
 Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
           MGISRD+WHKRR TG +   + ++ +  +     +  A     P R  T     V     
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53

Query: 200 GHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 358
            +R L L +G F+        +   +DVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54  KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 359 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           ESHY LPLGRKKGAKLT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163



 Score =  119 bits (286), Expect = 8e-27
 Identities = 52/64 (81%), Positives = 57/64 (89%)
 Frame = +3

Query: 66  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 245
           GKR P  KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16  GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75

Query: 246 TRIL 257
           TRI+
Sbjct: 76  TRII 79


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  147 bits (356), Expect = 2e-35
 Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
           MGISRD+WHKRR TG +   + ++ +  +     +  A     P R  T     V     
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53

Query: 200 GHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 358
            +R L L +G F+        +   +DVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54  KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 359 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           ESHY LPLGRKKGAKLT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163



 Score =  119 bits (286), Expect = 8e-27
 Identities = 52/64 (81%), Positives = 57/64 (89%)
 Frame = +3

Query: 66  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 245
           GKR P  KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16  GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75

Query: 246 TRIL 257
           TRI+
Sbjct: 76  TRII 79


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  147 bits (356), Expect = 2e-35
 Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
           MGISRD+WHKRR TG +   + ++ +  +     +  A     P R  T     V     
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53

Query: 200 GHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 358
            +R L L +G F+        +   +DVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54  KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 359 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           ESHY LPLGRKKGAKLT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163



 Score =  119 bits (286), Expect = 8e-27
 Identities = 52/64 (81%), Positives = 57/64 (89%)
 Frame = +3

Query: 66  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 245
           GKR P  KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16  GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75

Query: 246 TRIL 257
           TRI+
Sbjct: 76  TRII 79


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  147 bits (356), Expect = 2e-35
 Identities = 84/170 (49%), Positives = 107/170 (62%), Gaps = 7/170 (4%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
           MGISRD+WHKRR TG +   + ++ +  +     +  A     P R  T     V     
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELG----RPAANTKIGPRRIHT---VRVRGGNK 53

Query: 200 GHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 358
            +R L L +G F+        +   +DVVYNASNNELVRTKTLVKN IV++D+TP+RQWY
Sbjct: 54  KYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWY 113

Query: 359 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           ESHY LPLGRKKGAKLT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 163



 Score =  119 bits (286), Expect = 8e-27
 Identities = 52/64 (81%), Positives = 57/64 (89%)
 Frame = +3

Query: 66  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 245
           GKR P  KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16  GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75

Query: 246 TRIL 257
           TRI+
Sbjct: 76  TRII 79


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score =  139 bits (336), Expect = 7e-33
 Identities = 80/164 (48%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
 Frame = +2

Query: 20  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
           MGISRD+WHKRR TG +   + ++ +            RP+AN                 
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANT-------------KIG 39

Query: 200 GHR*LLLGI-GMFNSQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 376
             R   + + G    +   +DVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 40  PRRIHTVRVRGGCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99

Query: 377 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           PLGRKKGAKLT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 100 PLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 143



 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 29/39 (74%), Positives = 34/39 (87%)
 Frame = +3

Query: 66  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 182
           GKR P  KKRKYELGRPAANT++GP+RIH+VR RGG T+
Sbjct: 16  GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54


>BC005678-1|AAH05678.1|   80|Homo sapiens Similar to ribosomal
           protein S8 protein.
          Length = 80

 Score = 38.3 bits (85), Expect = 0.017
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = +2

Query: 404 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
           LT  EE I+NKKRS+K  +KY  R++ AK+   LE
Sbjct: 1   LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLE 35


>AB016767-1|BAA74724.1|  523|Homo sapiens telomerase transcriptase
           protein.
          Length = 523

 Score = 31.5 bits (68), Expect = 2.0
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -2

Query: 250 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRPNSYFLFLR 83
           R  R E   PQ+ + V  RS R L  PPR RT+    W     S    AG      + LR
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLR 464

Query: 82  MGARFPAGGP 53
            G   PAG P
Sbjct: 465 AGLPAPAGAP 474


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,872,417
Number of Sequences: 237096
Number of extensions: 1739449
Number of successful extensions: 4240
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4236
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -