Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0751
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   126   8e-30
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    27   6.5  
AL132864-3|CAE46684.2|  103|Caenorhabditis elegans Hypothetical ...    27   6.5  
U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  126 bits (305), Expect = 8e-30
 Identities = 76/164 (46%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
 Frame = +2

Query: 20  MGISRDHWHKRRATG-WETCAHTQEE-EV*VRASRCKHQARPSANPLRSFTWWKY*VPCA 193
           MGISRD WHKR  TG  +   H + + E+   A+  K  A             KY     
Sbjct: 1   MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60

Query: 194 ASGHR*LLLGIGMFNSQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 373
            SG+            +   +D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY 
Sbjct: 61  DSGN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118

Query: 374 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 505
           LPL RKK AKL+E + AI+NKKRS  T +KY  RQ+ A V+  L
Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALL 162



 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 44/65 (67%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +3

Query: 66  GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 242
           G   P+  KKRK+ELGRPAANT++G  R+  VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15  GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74

Query: 243 KTRIL 257
           KTRI+
Sbjct: 75  KTRIV 79


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 171  GNTKYRALRLDTGNFSWGSECSTRKTRILMLC-IMHLTMNW 290
            G T ++ +R +TG F W  +C      +  LC +M +   W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 171  GNTKYRALRLDTGNFSWGSECSTRKTRILMLC-IMHLTMNW 290
            G T ++ +R +TG F W  +C      +  LC +M +   W
Sbjct: 1189 GKTYFQQIRSETGKFFWLGQCVLVFNNMKPLCDVMKINKIW 1229


>AL132864-3|CAE46684.2|  103|Caenorhabditis elegans Hypothetical
           protein Y53H1A.4 protein.
          Length = 103

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -2

Query: 304 GLCTHQFIVRCIIHNIKIRVLRVEHSDPQEKLPVSRRSARYLVFPPR 164
           G C+  F++ C+  +I  R +R  H  P+ KL V R   RYL+   R
Sbjct: 4   GKCSIIFLLFCVFGSILSRAIRKRH--PEGKL-VIRDCKRYLIMYSR 47


>U88315-4|AAB42369.3|  778|Caenorhabditis elegans Hypothetical
           protein C37H5.5 protein.
          Length = 778

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +2

Query: 386 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 505
           +K G     A++  I K+++ KTA+KY  +++LA++E  L
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADL 461


>U13875-8|AAN63443.1|  633|Caenorhabditis elegans Hypothetical
           protein C26E6.7a protein.
          Length = 633

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +2

Query: 242 QNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 379
           Q P+L+ +Y  +  E      +        D   FR W + H++ P
Sbjct: 156 QRPFLEEMYYFNPQETGTASEIFDMLFPAKDTPNFRPWLDGHFSAP 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,334,046
Number of Sequences: 27780
Number of extensions: 255430
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)