Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0751
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri... 91 3e-19
At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso... 91 3e-19
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 31 0.49
At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger) fa... 31 0.65
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 29 1.5
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p... 29 2.0
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At5g44890.1 68418.m05504 Ulp1 protease family protein contains P... 27 8.0
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR... 27 8.0
At3g26530.1 68416.m03312 Ulp1 protease family protein contains P... 27 8.0
At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1) i... 27 8.0
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265... 27 8.0
At1g08740.1 68414.m00971 Ulp1 protease family protein contains P... 27 8.0
>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
Length = 210
Score = 91.5 bits (217), Expect = 3e-19
Identities = 44/65 (67%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 242
GK+ RKKRKYELGR ANT+L + + +R RGGN K+RALRLDTGNFSWGSE TR
Sbjct: 16 GKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTR 75
Query: 243 KTRIL 257
KTRIL
Sbjct: 76 KTRIL 80
Score = 85.0 bits (201), Expect = 3e-17
Identities = 67/170 (39%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
Frame = +2
Query: 20 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSFTWWKY*VPCAAS 199
MGISRD HKRRATG + ++ + R + S+N T + V
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKY--ELGRQPANTKLSSNK----TVRRIRVRGGNV 54
Query: 200 GHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 358
R L L G F+ + LDV YNASNNELVRT+TLVK+AIV VDA PF+Q Y
Sbjct: 55 KWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGY 114
Query: 359 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALE 508
HY + +GRKK + EE K+S RK RQ ++ LE
Sbjct: 115 LQHYGVDIGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLE 160
>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
protein S8 - Zea mays, PIR:T04088
Length = 222
Score = 91.5 bits (217), Expect = 3e-19
Identities = 78/182 (42%), Positives = 94/182 (51%), Gaps = 19/182 (10%)
Frame = +2
Query: 20 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARPSANPLRSF--TWWKY*VPCA 193
MGISRD HKRRATG + Q++ R R R AN S T + V
Sbjct: 1 MGISRDSIHKRRATGGK-----QKQW---RKKRKYEMGRQPANTKLSSNKTVRRIRVRGG 52
Query: 194 ASGHR*LLLGIGMFN-------SQNPYLDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 352
R L L G ++ + LDVVYNASNNELVRTKTLVK+AIV VDA PF+Q
Sbjct: 53 NVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQ 112
Query: 353 WYESHYTLPLGR-KKGAKLT-----EAEEAII----NKKRSQKTARKYLARQRLAKVEGA 502
WY SHY + LGR KK A T E EEA + K+S RK +RQ ++
Sbjct: 113 WYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSH 172
Query: 503 LE 508
+E
Sbjct: 173 IE 174
Score = 90.6 bits (215), Expect = 6e-19
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 242
GK+ RKKRKYE+GR ANT+L + + +R RGGN K+RALRLDTGN+SWGSE +TR
Sbjct: 16 GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTR 75
Query: 243 KTRIL 257
KTR+L
Sbjct: 76 KTRVL 80
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 366 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSRYGFCELNIPIP 220
C Y L GV S+ +A L+ + R SL+ + + Y C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540
>At3g45560.1 68416.m04921 zinc finger (C3HC4-type RING finger)
family protein contains Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 503
Score = 30.7 bits (66), Expect = 0.65
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 301 LCTHQFIVRCIIHNIKIRVL-----RVEHSDPQEKLPVSR 197
LC HQF V C+ IK+R+L R H + KL V R
Sbjct: 173 LCGHQFCVECMTQYIKVRLLEESEMRCPHYQCESKLTVVR 212
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -2
Query: 358 IPLPEWSCIYYNNCI-----LDKGLCTHQFIVRCIIHNIKIRVL 242
I +P I +NN + +C HQF V C+ H I++++L
Sbjct: 149 ICMPATCSICFNNVLEAEKMFSVAICGHQFCVECVKHYIEVKLL 192
>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
protein / Kunitz family protein similar to trypsin
inhibitor propeptide [Brassica oleracea] GI:841208;
contains Pfam profile PF00197: Trypsin and protease
inhibitor
Length = 215
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 287 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 415
L T L NA VVD ++ES+Y LP+ R +G LT A
Sbjct: 16 LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 301 LCTHQFIVRCIIHNIKIRVL 242
LC H+F V C+ +I++R+L
Sbjct: 191 LCGHEFCVECVKRHIEVRLL 210
>At5g44890.1 68418.m05504 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g21030, At2g29240,
At1g08740, At1g08760
Length = 1015
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 229 SDPQEKLPVSRRSARYLVFPPRERTEWIR*GPSLVFAAGRPNSYFLFLRM-GARFPAGGP 53
+ P + +P + + L+ PP + E+ PSL P+ Y + + M G + G P
Sbjct: 622 TSPDKPIPAAASHTQCLLPPPTDVNEFFESEPSL------PDPYVVLVDMDGVAYNVGQP 675
Query: 52 SLMPVIP 32
L IP
Sbjct: 676 ELQYTIP 682
>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 292 HQFIVRCIIHNIKIRVLRVEHSDPQEKLPVSR 197
HQF + II NIK+R R H + KL + +
Sbjct: 260 HQFQLGAIIDNIKVRYPRPCHDEYSAKLQLQK 291
>At3g26530.1 68416.m03312 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g21020, At1g08760,
At1g08740, At2g29240, At1g35650
Length = 1015
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 229 SDPQEKLPVSRRSARYLVFPPRERTEWIR*GPSLVFAAGRPNSYFLFLRM-GARFPAGGP 53
+ P + +P + + L+ PP + E+ PSL P+ Y + + M G + G P
Sbjct: 622 TSPDKPIPAAASHTQCLLPPPTDVNEFFESEPSL------PDPYVVLVDMDGVAYNVGQP 675
Query: 52 SLMPVIP 32
L IP
Sbjct: 676 ELQYTIP 682
>At2g02950.1 68415.m00242 phytochrome kinase substrate 1 (PKS1)
identical to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 439
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 75 APIRKKRKYELGRPAANTRLGPQRIHSVRSRGGN 176
+P+R+ R ++ R + PQR S S GGN
Sbjct: 339 SPVRRNRPTQIPRIPITAKSAPQRRKSSSSSGGN 372
>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
At1g08760, At1g08740, At2g29240, At1g35650
Length = 751
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 229 SDPQEKLPVSRRSARYLVFPPRERTEWIR*GPSLVFAAGRPNSYFLFLRM-GARFPAGGP 53
+ P + +P + + L+ PP + E+ PSL P+ Y + + M G + G P
Sbjct: 622 TSPDKPIPAAASHTQCLLPPPTDVNEFFESEPSL------PDPYVVLVDMDGVAYNVGQP 675
Query: 52 SLMPVIP 32
L IP
Sbjct: 676 ELQYTIP 682
>At1g08740.1 68414.m00971 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g21020, At3g26530,
At1g08760, At2g29240, At1g35650, At1g21030
Length = 1014
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 229 SDPQEKLPVSRRSARYLVFPPRERTEWIR*GPSLVFAAGRPNSYFLFLRM-GARFPAGGP 53
+ P + +P + + L+ PP + E+ PSL P+ Y + + M G + G P
Sbjct: 621 TSPDKPIPAAASHTQCLLPPPTDVNEFFESEPSL------PDPYVVLVDMDGVAYNVGQP 674
Query: 52 SLMPVIP 32
L IP
Sbjct: 675 ELQYTIP 681
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,706,635
Number of Sequences: 28952
Number of extensions: 236361
Number of successful extensions: 701
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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