Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0750
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   3.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.3  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 80  RDTESFIDLIIKTGGGVGFRMRSP 151
           +D E  + L   +GGG G +MR P
Sbjct: 101 KDDEKCLSLERPSGGGKGKKMRKP 124


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -1

Query: 238 YQGRIFPCNHFFTHISVFYRTVMTNHN*VRASHSKTNTSASFYYEINERLCITALSFW 65
           Y  RIF  N  F HI    RT++   + V+    + N ++S   +++  + I+ +  W
Sbjct: 150 YFNRIFGWNILFGHIFTVCRTLIYIDDNVKGLGKQYNIASSKTLKLSINI-ISLVQLW 206


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 132 PTPPPVFIMRSMNDSVSRRCLSGVITTQ 49
           P+PPP   +    D+ S+R  +   +TQ
Sbjct: 101 PSPPPEERLTPSKDASSKRIXTAFTSTQ 128


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 328 RLPASARLGLQCISFLW 278
           RLPA   +GL+C+  L+
Sbjct: 367 RLPALRSIGLKCLEHLF 383


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,129
Number of Sequences: 336
Number of extensions: 4473
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)