Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0750
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    27   3.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.9  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   3.9  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   5.2  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.1  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 481 SKEKSFGAFEPPSTNR*LSTIQSSMRTLPEKNSALTWVSISRPLSKNSARKTGPTQPESS 660
           S   S  +F    ++  +S+  SS  + P  +S+    S S P S + +  T  ++  SS
Sbjct: 309 SSSSSSSSFSSTLSSSSMSS-SSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSS 367

Query: 661 FTATVS 678
           F++TVS
Sbjct: 368 FSSTVS 373


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 504 LRATLDKQMTQYYSIVNAHTSGEELSSHMGFNIASAVKKFREKNGTY 644
           L  T+   + ++Y++     S    + H G    S V+K+ +K G Y
Sbjct: 79  LTITIQDALARFYAMHGYKVSFRPGTDHAGIATQSVVEKYLQKKGVY 125


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 418 TVDIPLPSLMVVGYDVCH 471
           TV +PLP L+  GYD  H
Sbjct: 705 TVSVPLPELLHEGYDTFH 722


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 573  ELSSHMGFNIASAVKKFREK--NGTYPARIFIYRDGVGDGPIPY 698
            EL+  +  NI S +  F EK  NG +PA  FI  + +G  P  Y
Sbjct: 1079 ELTETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDY 1122


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 451 VGYDVCHDTRSKEKSFGAFEPPSTNR*LSTIQSSMRTLPEKNSALTWVSI-SRPLSKNSA 627
           V Y+V  D R  + S  A +PP+ N  L+    S   L +  + ++ VS+ SR  S +S 
Sbjct: 30  VRYEVEDDLRKLKPSRTAPKPPAINTNLAEDTFSGFPLSQSRTTVSRVSLGSRQHSSSSI 89

Query: 628 RK 633
           RK
Sbjct: 90  RK 91


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 491 RASGPSSHPRQTDDSVLFN 547
           +  G  SHP+  DDSV F+
Sbjct: 163 KGKGKKSHPKPEDDSVFFD 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,692
Number of Sequences: 5004
Number of extensions: 73670
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)