Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0746
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)                    28   7.5  
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
          Length = 601

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 23  FLVTMMWKTXLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKG 202
           FL  +     ++++   GV  D +S I  +V      N A D + EVE A R        
Sbjct: 284 FLKVLKGAGAVLSVIGIGV--DLYSIINTLVECDKKSNQAADAIKEVEKAEREVSKSETE 341

Query: 203 LVDLNV-LKTEIEE 241
           L D N  LKT + E
Sbjct: 342 LRDFNTELKTFMRE 355


>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 185 GNCLKGLVDLNVLKTEIEE 241
           GNCLKG+V++NV    IE+
Sbjct: 277 GNCLKGIVNVNVSPNIIEQ 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,107,747
Number of Sequences: 59808
Number of extensions: 489047
Number of successful extensions: 1188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)