Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0746
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    29   4.6  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   6.1  
At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA ...    28   6.1  

>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 56  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 235
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 236 EE 241
           +E
Sbjct: 799 DE 800


>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 259 LDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQNS 390
           LD  F+    +  +  G I  +LQG+R  + +EY +  N+  NS
Sbjct: 136 LDREFESILRRRRRSSGNILQLLQGIRAGIASEYESSDNNWDNS 179


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 80   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 211
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At1g29880.1 68414.m03652 glycyl-tRNA synthetase / glycine--tRNA
           ligase identical to SP|O23627 Glycyl-tRNA synthetase (EC
           6.1.1.14) (Glycine--tRNA ligase) (GlyRS) {Arabidopsis
           thaliana}
          Length = 729

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +2

Query: 98  QITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNVHSTRFSR 277
           QI    T Q  + +  +K   VEA     GN ++ L      K EI+ A   ++  +  +
Sbjct: 37  QIPMDATEQSLRQSLSEKSSSVEAQ----GNAVRALKASRAAKPEIDAAIEQLNKLKLEK 92

Query: 278 STVTRVL 298
           STV + L
Sbjct: 93  STVEKEL 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,446
Number of Sequences: 28952
Number of extensions: 337119
Number of successful extensions: 918
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)