Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0742
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 167 2e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 9e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 64 3e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 6e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 47 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 3e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 37 0.003
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.041
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.2
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 167 bits (405), Expect = 2e-42
Identities = 88/140 (62%), Positives = 97/140 (69%)
Frame = -2
Query: 713 EKSYELPRRXRSSPSETKDSVAQRLSSNPRFLGMEACGIHETTYNSIMKVRRGHP*GLVR 534
EKSYELP + + + L P LG+E GIHE TYNSIMK L
Sbjct: 237 EKSYELPDGQVITIGNERFRAPEALFQ-PSALGLENAGIHEATYNSIMKCDVDIRKDLYG 295
Query: 533 QHRIVRWYPMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 354
+ MYPGIADRMQKEI A APS+MK+KI+APPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQM 355
Query: 353 WISKQEYDESGPSIVHRKCF 294
WISKQEYDESGP IV+RKCF
Sbjct: 356 WISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 68.5 bits (160), Expect = 9e-13
Identities = 42/138 (30%), Positives = 73/138 (52%)
Frame = -2
Query: 707 SYELPRRXRSSPSETKDSVAQRLSSNPRFLGMEACGIHETTYNSIMKVRRGHP*GLVRQH 528
+Y+LP ++ T+ A + NP +G EA G+H + SI+ L
Sbjct: 244 TYQLPDN-QTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNI 302
Query: 527 RIVRWYPMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 348
+ + G +R E+ A + ++KI A PER ++ W+GGSILASLSTF+++ I
Sbjct: 303 VLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLI 362
Query: 347 SKQEYDESGPSIVHRKCF 294
+ +EY ++ +++ R+ F
Sbjct: 363 TSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.7 bits (148), Expect = 3e-11
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Frame = -2
Query: 602 GIHETTYNSIMKVRRGHP*GLVRQHRIVRWYPMYPGIADRMQKEITAXAP-STMKIKIIA 426
G+HE Y SI+ L+ + + PG+++R+Q E+ A S + +
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAE 382
Query: 425 PPER-KYSVWIGGSILASLSTFQQMWISKQEYDESG 321
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 383 TASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 6e-11
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Frame = -2
Query: 497 GIADRMQKEITAXAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDE 327
G + R+Q E++ P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E
Sbjct: 361 GFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Query: 326 SGP---SIVHRKC 297
G +++ ++C
Sbjct: 420 HGSDRLALIEKRC 432
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 568 KCDVDIRKDLYANTVLSGGT 509
+CDVDIR L N ++ GGT
Sbjct: 337 ECDVDIRASLLNNVIVCGGT 356
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 47.2 bits (107), Expect = 2e-06
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Frame = -2
Query: 629 PRFLGMEACGIHETTYNSIMKVRRGHP*GLVRQHRIVRWYPMYPGIADRMQKEIT----- 465
P +G E G+ E +++I L R + MY G+ R++KEI
Sbjct: 264 PHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFE 323
Query: 464 -------AXAPSTMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 321
A P+ K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 324 RVLHGDPARLPN-FKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 699 TSPTXQVITIGNERFRCPEAFFQPSFLG 616
T P +VI +G+ER+ CPE FQP +G
Sbjct: 241 TLPDGRVIKVGSERYECPECLFQPHLVG 268
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/108 (22%), Positives = 45/108 (41%)
Frame = -2
Query: 632 NPRFLGMEACGIHETTYNSIMKVRRGHP*GLVRQHRIVRWYPMYPGIADRMQKEITAXAP 453
+P +G++ GI E + + + LV I PG+ R+++E+T+ P
Sbjct: 604 SPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMP 663
Query: 452 STMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 309
I + W G S + F+ ++++EY E GP +
Sbjct: 664 VGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 440 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 303
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 559 VDIRKDLYANTVLSGGT 509
+D+RK LY N VLSGG+
Sbjct: 320 IDVRKGLYKNIVLSGGS 336
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 678 ITIGNERFRCPEAFFQP 628
I +G ERF PE FF P
Sbjct: 280 IDVGFERFLAPEIFFNP 296
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = -2
Query: 503 YPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 324
+PG R+ E+ + AP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 323 GPSIVHRK 300
G +I+ RK
Sbjct: 391 GANIMTRK 398
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 684 QVITIGNERFRCPEAFFQPS 625
QV+ + NERF PE F PS
Sbjct: 272 QVLNLSNERFMIPELLFSPS 291
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.1 bits (72), Expect = 0.041
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -2
Query: 503 YPGIADRMQKEITAXAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEY 333
+PG A +++ I + + I +I PP + ++ W G I + ++WI ++
Sbjct: 542 FPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDW 601
Query: 332 DESGPSIVHRK 300
G ++ K
Sbjct: 602 KMLGSRVLQYK 612
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -3
Query: 343 NKSTTSLAPPLYTGSASKRTARRCLQQPAAAAQFRLVISVNLIVRKI 203
N+S +SL+ Y+ SK+T+ L + A+ Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 401 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 300
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 476 KEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLST 366
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,610
Number of Sequences: 5004
Number of extensions: 58911
Number of successful extensions: 176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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