Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0742
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             149   2e-38
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.0  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  149 bits (362), Expect = 2e-38
 Identities = 81/123 (65%), Positives = 86/123 (69%)
 Frame = -2

Query: 713 EKSYELPRRXRSSPSETKDSVAQRLSSNPRFLGMEACGIHETTYNSIMKVRRGHP*GLVR 534
           EKSYELP     +    +    + L   P FLGMEACGIHETTYNSIMK        L  
Sbjct: 12  EKSYELPDGQVITIGNERFRCPEALFQ-PSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 70

Query: 533 QHRIVRWYPMYPGIADRMQKEITAXAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 354
              +     MYPGIADRMQKEITA APSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQM
Sbjct: 71  NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQM 130

Query: 353 WIS 345
           WIS
Sbjct: 131 WIS 133


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 553 CPRRTFMMELYVVSWMPQASIPKKRGLEESLW 648
           CP   F+ +L   + + +  IPK++  E+SL+
Sbjct: 277 CPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLY 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,328
Number of Sequences: 438
Number of extensions: 4448
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)