Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0741
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.4  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   7.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.5  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 394 QSAHCTGLLHRPHDNRRHGRLGTGVQSNA 480
           Q + C     R HD RRH +L TG+++ A
Sbjct: 601 QCSICKKSFARQHDKRRHEQLHTGIKAFA 629


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 347  QEITATPPAGRKVPDXRAPTVQDFFIDRMITVDTAG 454
            ++  ATP + R+    +  ++ DF ID+ + VD  G
Sbjct: 2418 EDALATPSSSRRDSRSKRASLIDFTIDKCLDVDDEG 2453


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 VDTAGWEPVFSLMHQLAEMFNF*IIRRSD 526
           +D +  +P F+ +HQ  + F+F I+  SD
Sbjct: 477 LDISDEDPKFAFVHQWNDAFSFYILNASD 505


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 481  PARRDVQFLDYTTLGSK 531
            P RR +QFLD+ +L +K
Sbjct: 1016 PQRRQIQFLDFDSLKTK 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,243
Number of Sequences: 5004
Number of extensions: 32394
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)