Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0741
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0098 - 17275045-17275665                                         28   4.1  
12_01_0249 + 1850443-1851030                                           28   5.5  
01_01_0117 + 864966-865686,866860-866883,867006-868063                 27   7.2  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    27   9.6  
01_01_0098 + 744582-745380,746107-746130,746500-747569                 27   9.6  

>03_04_0098 - 17275045-17275665
          Length = 206

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 450 PVGNRCSV*CTSSPRCSISR 509
           P G+RCS   TSSP C++SR
Sbjct: 45  PWGDRCSHGWTSSPACTLSR 64


>12_01_0249 + 1850443-1851030
          Length = 195

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 447 VSTVIMRSMKKSCTVGALXSGTFLPAGGVAVISCTSPRSV 328
           VS+   RS  KSC+ G+  S + L A      + T+PRSV
Sbjct: 23  VSSKKRRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSV 62


>01_01_0117 + 864966-865686,866860-866883,867006-868063
          Length = 600

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -2

Query: 522 ERRII*KLNISASWCIRLNTGSQPAVSTVI 433
           E+ ++ +L I A WCI+ N  ++P+++ V+
Sbjct: 545 EKEMVRQLAIVALWCIQWNPKNRPSMTKVV 574


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 522 ERRII*KLNISASWCIRLNTGSQPAVSTVI 433
           E+ ++ +L I A WCI+ N   +P+++ V+
Sbjct: 581 EKEMVRQLAIVALWCIQWNPKDRPSMTKVV 610


>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/30 (30%), Positives = 22/30 (73%)
 Frame = -2

Query: 522 ERRII*KLNISASWCIRLNTGSQPAVSTVI 433
           E++++ +L + A WCI+ N  ++P+++ V+
Sbjct: 575 EKQMVRQLALVALWCIQWNPRNRPSMTKVV 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,707,475
Number of Sequences: 37544
Number of extensions: 236606
Number of successful extensions: 546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)