Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0740
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-2|CAB07340.2|  310|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z92829-2|CAB07340.2|  310|Caenorhabditis elegans Hypothetical
           protein F10A3.2 protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 234 IFKSKCNVKFIYLNLTLHITDRDVASKCSLNL 139
           I K K  ++ + +NL +++T +D  +KC  NL
Sbjct: 115 ILKQKTKLELVQINLNVNVTKKDFRTKCFTNL 146


>U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical
           protein F37A4.6 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 520 SEMSLQPNT-LSPKGGSSFGARRGSHSRGQV 609
           S  S QP+  LSP   S F AR+ S SRG V
Sbjct: 104 SSSSSQPHFYLSPSNSSLFDARKSSRSRGAV 134


>U41530-1|AAA83273.3|  636|Caenorhabditis elegans Hypothetical
           protein SSSD1.1 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 725 VMGVQDPPLS*FQDLNLD 672
           ++GVQDPP   +QDL L+
Sbjct: 608 ILGVQDPPAQLYQDLRLE 625


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,969
Number of Sequences: 27780
Number of extensions: 254852
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)