Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0738
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   141   1e-34
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    31   0.20 
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    29   1.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   4.2  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   5.6  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    26   7.4  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    26   7.4  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   7.4  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  141 bits (341), Expect = 1e-34
 Identities = 57/95 (60%), Positives = 72/95 (75%)
 Frame = +3

Query: 477 LQMERKTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVA 656
           ++ + K +   HRT +EI    +V + TLRDPQ D  R Q P+WLV+IGVCTHLGCVP+ 
Sbjct: 122 VKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIG 181

Query: 657 NAGEFGGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
            AG++GG+ CPCHGSHYD SGRIR+GPAPLNL +P
Sbjct: 182 EAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIP 216



 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 24/41 (58%), Positives = 36/41 (87%)
 Frame = +1

Query: 385 FVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFI 507
           F++S SA+ADVLA++K E+ L++IPEGK++  KW+GKP+FI
Sbjct: 91  FLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFI 131


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 26  YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 154
           YF+S+T   A S +   ++PT +EK++ LPL   ST++T+  S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 667 NSGVTNVPATAPTTMLPDESAKAPPLST*KCP--PHVHGPRLAS 792
           +S + N P  AP +   D++A   PLST   P    V  P L+S
Sbjct: 199 SSSINNTPLQAPVSSFADQNAFTNPLSTFASPDLASVSSPSLSS 242


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 2   VRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 136
           +  G +AP     ++ +++   PL     PS   ++LP  ++ST+
Sbjct: 407 INDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 744 EGRGLCGFVRKHRSGSRGRDISNPRIHQHWLR 649
           E RGL    +K R   +G   +N   H  WLR
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRFNNSPQHATWLR 191


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 722 SSGSIVVGAVAGTLVTPEFTSIGYGHASQVGAYADHDQPLGV 597
           S  S+V  A+ GT+      S  YG      A+A HD   G+
Sbjct: 54  SKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGL 95


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 686 TLVTPEFTSIGY-GHASQVGAYADHDQPLGVL 594
           T++T   +   Y  + S  G +A+HD P+G+L
Sbjct: 138 TMITAGVSIFSYFQNTSSKGKHAEHDSPIGLL 169


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 744 EGRGLCGFVRKHRSGSRGRDISNPRIHQHWLR 649
           E RGL    +K R   +G   +N   H  WLR
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRYNNSPQHATWLR 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,941
Number of Sequences: 5004
Number of extensions: 72661
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)