Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0738
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0023 - 19000591-19001234,19003322-19003496 141 5e-34
04_03_0792 + 19693957-19694146,19695614-19696260 141 7e-34
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 60 3e-09
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 36 0.029
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 34 0.12
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 32 0.48
11_06_0546 + 24853167-24853880 31 0.83
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15... 31 1.1
04_03_0775 + 19462030-19462500,19462674-19462883 30 1.9
04_03_0621 - 18102243-18104249 29 4.4
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 29 5.9
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 141 bits (342), Expect = 5e-34
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K + RT ++I+ +V + +LRDPQ D +R +NP+WLVVIGVCTHLGC+P+ NAG+F
Sbjct: 170 KPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 229
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
GG+ CPCHGSHYD SGRIRKGPAP NLEVP
Sbjct: 230 GGWFCPCHGSHYDISGRIRKGPAPYNLEVP 259
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/67 (41%), Positives = 38/67 (56%)
Frame = +1
Query: 307 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 486
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 487 RGKPLFI 507
RGKP+FI
Sbjct: 168 RGKPVFI 174
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 141 bits (341), Expect = 7e-34
Identities = 59/90 (65%), Positives = 71/90 (78%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K + RT D+I+ +V V +LR PQ D +R +NP+WLVVIGVCTHLGC+P+ NAG+F
Sbjct: 176 KPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDF 235
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEVP 761
GG+ CPCHGSHYD SGRIRKGPAP NLEVP
Sbjct: 236 GGWFCPCHGSHYDISGRIRKGPAPFNLEVP 265
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/67 (41%), Positives = 38/67 (56%)
Frame = +1
Query: 307 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 486
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 487 RGKPLFI 507
RGKP+FI
Sbjct: 174 RGKPVFI 180
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 59.7 bits (138), Expect = 3e-09
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +3
Query: 624 VCTHLGCVPVANAGEFGGY*CPCHGSHYDASGRIRKGPAPLNL 752
VCTHLGCV NA E + CPCHGS Y+ GR+ +GPAPL+L
Sbjct: 153 VCTHLGCVVPWNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSL 194
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 36.3 bits (80), Expect = 0.029
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K YP + ++ + VP+D + Q R ++ + V+ C H C +
Sbjct: 232 KNFWYPVAFSSDLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNE 290
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEV 758
G CP HG Y G+ K P+ L V
Sbjct: 291 GRIQCPYHGWEYSTDGKCEKMPSTKMLNV 319
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = +3
Query: 492 KTIVYPHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEF 671
K YP + ++ + VP+D + Q R ++ + V C H C +
Sbjct: 232 KNFWYPVVFSGDLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSE 290
Query: 672 GGY*CPCHGSHYDASGRIRKGPAPLNLEV 758
G CP HG Y G+ K PA L V
Sbjct: 291 GRIQCPFHGWEYSTDGKCEKMPATKLLNV 319
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 574 STTINAPKTPSGWS*SAYAPTWDACP*PMLVNSGVTNVPATAPTTMLPD 720
S T P+ + W S PTW P +VNS P + TMLPD
Sbjct: 251 SPTARTPRMKTDWDESNVQPTWTGSNSPCVVNS----TPPSPGRTMLPD 295
>11_06_0546 + 24853167-24853880
Length = 237
Score = 31.5 bits (68), Expect = 0.83
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 507 PHRTADEISTEKAVPVDTLRDPQHDDQ 587
P + DEI + P+ TL+ PQH DQ
Sbjct: 164 PDQVRDEIKAHRKQPILTLKQPQHQDQ 190
>07_01_0023 -
154119-154541,154697-154741,154875-154922,156104-156185,
156365-156444,156606-156677,156827-156921,157479-157515
Length = 293
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +1
Query: 583 INAPKTPSGWS*SAYAPTWDACP*-PMLVNSG-VTNVPATAPTTMLPDESAKAPPLST*K 756
+N+ K GW+ A P P +G V + +P LP P S +
Sbjct: 207 MNSSKKGGGWARGGRGKLQVAAPHSPQSAPAGSVGHFEPASPRHKLPASPRHKCPSSPRQ 266
Query: 757 CPPHVHGPRL 786
PPH HGPR+
Sbjct: 267 PPPHAHGPRM 276
>04_03_0775 + 19462030-19462500,19462674-19462883
Length = 226
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = +3
Query: 510 HRTADEISTEKA--VPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFG--- 674
HR+ ++ + + VPV L + +H +Q+ NP W + + + A E
Sbjct: 109 HRSKEKETNHRPRNVPVRRLEN-KHYNQQQHNPLWQMSKANGSGFYILHKARCSEIREAH 167
Query: 675 --GY*CPCHGSHYDASGRIRKGPAPLNLEVPPT 767
G+ CPC G AP + ++PPT
Sbjct: 168 QRGFSCPCKGEEETLEELTTVAAAPASSQIPPT 200
>04_03_0621 - 18102243-18104249
Length = 668
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 50 VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSL 157
+A SL+ + + PT + + P+T+TV+T H L
Sbjct: 23 IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLL 58
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 28.7 bits (61), Expect = 5.9
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +2
Query: 428 PRLKSSWLKF--QKESLSPSNGEENHCLSSQDSRRNLDREGCACRHAP*PSARRSTHPKP 601
PRLK S S SPS E+ LS RR L + +HAP P+ + PKP
Sbjct: 27 PRLKPSCAASTSSSSSSSPSLAEQLEPLS----RRLLHGKPTPTQHAPEPTWVNPSKPKP 82
Query: 602 QVVG--RDRRMHP 634
V+ R RR P
Sbjct: 83 TVLSLRRHRRRSP 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,211,184
Number of Sequences: 37544
Number of extensions: 559738
Number of successful extensions: 1658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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